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Video: EIOW Exascale I/O Working Group

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In this video from the Lustre User Group 2013, Meghan McClelland from Xyratex presents: EIOW – Exascale I/O Working Group.

There is a fierce competition on the storage market to offer the best performing devices, with great management at a low price. The EIOW group, from the outset, decided that it would not attempt to offer an end-to-end solution, which would necessarily involve competing instead of working with storage providers. The focus of EIOW is on middleware to provide, for example, schemas describing data structure and layout, novel access methods to data for applications, a uniform data management infrastructure and a framework for the implementation of layered I/O software, similar in spirit to HDF5 as a specialized use of a parallel file system. We decided EIOW should be open, and have interfaces to layer on lower level storage infrastructure such as object stores, databases and file systems as provided by storage providers, to allow their expertise and leadership in this area to continue to benefit the HPC community.

Download the EIOW whitepaper and slides, or check out our LUG 2013 Video Gallery.

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Researchers Set New Simulation Speed Record on Sequoia Supercomputer

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Over at Lawrence Livermore National Laboratory, Donald B Johnston writes that researchers at LLNL and Rensselaer Polytechnic Institute have set a high performance computing speed record that opens the way to the scientific exploration of complex planetary-scale systems.

In a paper to be published in May, the joint team will announce a record-breaking simulation speed of 504 billion events per second on LLNL’s Sequoia Blue Gene/Q supercomputer, dwarfing the previous record set in 2009 of 12.2 billion events per second. Participants included Peter Barnes, Jr. and David Jefferson of LLNL and CCNI Director and computer science professor Chris Carothers and Justin LaPre of Rensselaer. The records were set using the ROSS (Rensselaer’s Optimistic Simulation System) simulation package developed by Carothers and his students, and using the Time Warp synchronization algorithm originally developed by Jefferson.

This is an exciting time to be working in high-performance computing, as we explore the petascale and move aggressively toward exascale computing,” Carothers said. “We are reaching an interesting transition point where our simulation capability is limited more by our ability to develop, maintain and validate models of complex systems than by our ability to execute them in a timely manner.”

The calculations were completed while Sequoia was in unclassified “early science” service as part of the machine’s integration period. The system is now in classified service for the National Nuclear Security Administration’s Advanced Simulation and Computing program for stewardship of the nation’s nuclear weapons stockpile.

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Video Gallery: HPC Advisory Council Switzerland Workshop

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Video Gallery: HPC Advisory Council Switzerland Workshop

 

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Tsinghua University from Mainland China Wins Asia Student Cluster Challenge

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After five days of fierce rivalry, a team from Tsinghua University in Mainland China have won the first annual Asia Student Supercomputer Challenge. The international competition wrapped up with Tsinghua University from Taiwan as runner up. Huazhong Science and Technology University in Mainland China was awarded the prize of “Best MIC application optimization.”

In total, seven student teams from China, Taiwan, Russia, South Korea and Saudi Arabia competed in the finals after a preliminary contest from the 43 universities.

We hope to inspire the enthusiasm of young students toward supercomputing, and advance supercomputing applications and development, and talent cultivation and exchange among Asian countries and regions by holding this kind of contest,” said Liu Jun, general manager of the high performance supercomputing department of Inspur Group. “Seeing the effects of the contest, we successfully realized our goal. The enthusiasm and innovation in supercomputing technology that was shown by the students was quite exciting for me.”

The winning Tsinghua University team will travel compete in the ISC’13 Student Cluster Competition in Leipzig, Germany this June. Read the Full Story.

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Video: GPUDirect Support for RDMA and Green Multi-GPU Architectures

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In this video from the 2013 GPU Technology Conference, Dustin Franklin from GE Intelligent Platforms presents: GPUDirect Support for RDMA and Green Multi-GPU Architectures. View the GE Presentation Slides on Slideshare.

This talk caused quite a stir and we have done a number of posts on it including a Radio Free HPC podcast.

Note that all presentation videos and slides from the GPU Technology Conference are now available on-demand.

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Video: The New Style of IT – HP Moonshot Update for Moabcon 2013

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In this video from Moabcon 2013, Dick Bland and Jérôme Labat from HP present: The New Style of IT: HP Update for Moabcon 2013.

Cloud, Mobility, Security, and Big Data are transforming what the business expects from IT resulting in a “New Style of IT.” The result of alternative thinking from a proven industry leader, HP Moonshot is the world’s first software defined server that will accelerate innovation while delivering breakthrough efficiency and scale.

While the first spin of Moonshot is not targeted at HPC, Bland said that HP will be able to spin up new modules for the platform that could include FPGAs and ARM-based nodes more suited to high performance computing.

View the Slides on Slideshare.

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IBM’s SuperMUC at LRZ to Reach 6.4 Petaflops

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HPC System SuperMUC, installed at GCS centre Leibniz Supercomputing Centre (LRZ) in Garching near Munich, has commenced the second part of its installation with a performance upgrade.

Nine months after its inauguration, an agreement was sealed for a planned system expansion to be completed by end of 2014 or early 2015. The upgrade of the LRZ supercomputer, SuperMUC, which currently delivers a peak performance of 3.185 petaflops and holds position 6 on the Top500 list, will boost the system’s performance by a factor of about 2.1, making it capable of 6.4 petaflops.

The contract for SuperMUC Phase II was signed by representatives of all parties involved: Arndt Bode of the Leibniz Supercomputing Centre (LRZ), Karl-Heinz Hoffmann (chair of Bayerische Akademie der Wissenschaften), Martina Koederitz (general manager of IBM Germany), and Andreas Pflieger (IBM) in the presence of Wolfgang Heubisch and Georg Antretter representing the Bavarian State Ministry of Sciences, Research and the Arts.

The agreement states that 74,302 Intel-Xeon processor cores will be added to the existing 155,656 processor cores of SuperMUC. Its main memory will be expanded from 340 to 538 terabytes and 9 petabytes of intermediate storage will complement the system’s existing capacity of 10 petabytes.

The LRZ HPC system has been designed for exceptionally versatile deployment. The more than 150 different applications running on SuperMUC on average per year range from solving problems in physics and fluid dynamics to a wealth of other scientific fields, such as aerospace and automotive engineering, medicine and bioinformatics, astrophysics and geophysics amongst others.

Professor Bode is confident that SuperMUC Phase II will be running as stably and reliably as the current system has done from day one – and that it will scale to the large number of cores.

Only shortly after starting operation, SuperMUC was working to full capacity. Already, there are applications that practically use the entire system, and they do this in a very efficient way. Especially in the realm of biology and life sciences, we expect a significantly higher demand of system performance in the foreseeable future. SuperMUC Phase II will be in an excellent position to meet these requirements,’ said Bode.

This story appears here as part of a cross-publishing agreement with Scientific Computing World.

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Interview: NAG’s Andrew Jones on the HPC Opportunities Coming to ISC’13

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As an active blogger and HPC community member, Andrew Jones from NAG is a fixture at many HPC conferences worldwide. With ISC’13 coming up in Leipzig on June 16-20, I caught up with Andrew to get his perspectives on the conference, HPC trends, and an update on his 2013 predictions.

insideHPC: In your blog and various talks I’ve seen, it is obvious that you are very passionate about the topics of hardware and software in the HPC space. What are the issues that resonate with you in these areas?

Andrew Jones: Yes, as anyone who has encountered me at conferences or read my blogs (hpcnotes.com and blog.nag.com) will know, I am a passionate advocate of HPC as a tool for science and economic impact – and equally passionate about ensuring that HPC is seen as a complete ecosystem of hardware, software, people, processes, etc. and not merely the hardware that is often the default focus of HPC. Clearly the hardware matters – a supercomputer offers the promise of a big performance increase over smaller computers. But the supercomputer on its own is just a device for converting money into waste heat (via some floating point units and an oversized electricity bill). The hardware needs software (applications) to turn the potential performance into a real science tool or engineering capability etc. And in turn, those applications need supporting infrastructure (middleware) to efficiently use the resources. Underpinning all of this software and hardware is the requirement for people – to design, deliver, program, etc. this complex ecosystem which can be such a powerful tool. All parts of this ecosystem need attention (and investment) in order to achieve the maximum rewards of HPC. I am lucky that I am not merely evangelizing this “software & people deliver performance” message based on faith. At NAG we have built up a significant evidence of success stories (from over 50 projects) that demonstrate that HPC expertise applied to application innovation really does deliver increased science/engineering output – much more so than investing the same effort/money in more hardware.

insideHPC: You attend many of the same HPC events around the world as I do. The other day, you mentioned at dinner that any HPC event is really not about the technical program so much but everything else around it, such as the networking opportunities, the exhibition, etc. Can you elaborate on that?

Andrew Jones: I believe the greatest potential value for most attendees is informally meeting a diverse range of fellow HPC professionals and users. Perhaps I could illustrate this by looking at the extreme – much of the obvious content of the technical program could be acquired through reading published papers or watching recordings of the conference talks, etc. However, attending the conference itself allows the possibility of a conversation with the author, or perhaps one of the other audience members inspired by the paper, etc. To me, it is that discussion inspired by the talks that is the real opportunity of HPC events. In smaller events the technical program is critical because that is where most of the attendees will spend most of their time and thus it sparks opportunities for networking. In the bigger events (e.g., SC or ISC) only a small proportion of the attendees will spend significant time in the main technical program, the rest being spent in the exhibition or surrounding side-meetings. Indeed, it is difficult to create a program of quality in every topic required to attract the breadth of attendees at such large events. At these events, the knowledge on offer comes also from a comprehensive exhibition (an often undervalued aspect of the bigger HPC events) which allows a much broader set of ideas, products and research to be offered to catch people’s attention than a technical program could do in a sensible timeframe. In my experience, catching up with existing contacts, discussing experiences with industry practitioners and experts, and creating new relationships are the key activities at HPC events that are likely to lead to beneficial collaborations.

insideHPC: We’re well into the year 2013. How well are your those HPC predictions you blogged about coming into fruition?

Andrew Jones: I said Big Data will gradually be overtaken as the buzzword of choice for the HPC community. No sign of that yet! I predicted that some new buzz-themes (needing catchy buzzwords) would emerge, specifically energy-efficient computing and ease-of-use in HPC. There are some tentative signs of this happening, especially energy-efficient computing, but I think there is still more to come this year.

I said there would be continuing discussion of GPU vs. Phi as the accelerator of choice – especially at ISC’13. I think this one is pretty much true so far, but let’s see in Leipzig!

I also predicted that the HPC community would see a strong focus on industrial HPC this year, especially engagement between centers of HPC expertise and industry users. [Note that I say “centers of HPC expertise” – it is critical that this does not mean only supercomputer centers – there is a lot of real expertise in HPC outside of the supercomputer centers – e.g., within the main HPC vendors, or specialist HPC expertise providers such as NAG, or in some cases within the industrial end users themselves.] I think this prediction has already come true, with more on the way. I hear companies increasingly seeing the potential of HPC within their business; those who have previously invested are increasing and broadening their investments; and companies are seeking interactions with centers of HPC expertise to get a step ahead of their competitors. At least in the UK, politicians are very keen to get industry using HPC and that investments are increasingly being predicated on that.

insideHPC: What will NAG be showcasing at their ISC’13 exhibit?

Andrew Jones: As always, NAG will send several staff to ISC’13. We will be available to discuss how our team of HPC software engineers can enhance customer application codes to implement better scalability, new algorithms or other innovations to get more performance and solve more complex problems. We can also help with advice on HPC strategy and procurement, and planning application development to exploit future hardware technologies.

As well as the HPC services and consulting side of our business, NAG will be showcasing the latest in our libraries products. In particular, this year we have a new release of the NAG Library (Mark 24) including new routines in optimization, FFTs, wavelets and data fitting – well over 1,000 routines in total including the existing NAG chapters. We’ll also display the NAG routines on the Intel Xeon Phi co-processor and other parallel computer technologies.

insideHPC: What is the NAG Library for SMP & Multicore?

Andrew Jones: The NAG Library for SMP & Multicore is a full implementation of the NAG Library in which a large number of the routines have been enhanced for parallel processing using OpenMP. This means they can run significantly faster on multi-socket and multicore systems, processing larger amounts of data, etc. This offers customers an easy way to achieve the performance advantage of multicore processors – simply link to the multicore version of the NAG Library instead of the serial version.

insideHPC: Why do you continue to attend and exhibit at ISC year after year? What makes this event special?

Andrew Jones: It is a HPC event that combines the best of everything. It has scale – over a thousand attendees – while somehow managing to retain the engaging small conference atmosphere of its origins. It has one of the better technical programs of the larger conferences due to the hard work by the organizers to balance well-chosen invited talks, discussion panels and peer-reviewed papers. Most importantly, the agenda, the exhibition, and the surrounding social events are all planned with excellent opportunities for networking.

At a local level, Germany is an important market for us both in both commercial and academic sectors (e.g., we have a number of large academic site licenses for our libraries), so ISC is a good opportunity to meet some of our end users.

Overall, for NAG, ISC’13 is a great place to meeting new people, to learn from them and to understand how NAG can help them with their HPC and numerical computing.

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LUG 2013 Video Gallery

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LUG 2013 Videos (Site Under Construction)


Note:
LUG 2013 slides are now available for download.

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Moabcon 2013 Videos

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Moabcon 2013 took place in Park City on April 9-11, 2013. At insideHPC, we were there to capture the very best of this conference to help keep you up to date on the latest Moab software developments.

Videos (Site Under Construction):


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Comparing Supercomputers to Formula 1 Racers

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Over at the ISC Blog, Andrew Jones from NAG writes that the familiar analogy of supercomputers being like a Formula 1 car may distract us from the fact that both require a strong team to be successful.

Powerful hardware (fast car) gives a big head start in achieving return on investment (it is harder to deliver performance step change without it). But the hardware alone is not enough for the best performance and sustained impact. Attention must be paid (and investment delivered) to the software innovation, the supporting business processes (e.g. ease of use/access), infrastructure, etc. – and, critically, to the people that make all of those possible.

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Video: Nebula One Brings the Cloud to You

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In this video, Nebula CEO Chris Kemp discusses his new product called the Nebula One and the future of cloud computing with Cory Johnson on Bloomberg Television. Kemp was formerly the CTO of NASA IT.

Nebula One brings the cloud to you, under your control, behind your firewall. It is an integrated hardware and software appliance providing distributed compute, storage, and network services in a unified system.

The Nebula One has to be cool — they’ve got Patrick Stewart and Andy Bechtolsheim in their launch video!

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Grand Challenges Déjà Vu

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In this special guest feature, Doug Black from The Exascale Report writes that, while the idea of Grand Challenges is not new, the need for powerful computational tools to solve these global issues remains unchanged.

Flash back to 1992. Do you remember the ‘Blue Book’ and the HPCC program? If this is your first exposure to the ‘Grand Challenges’ you may find this quite interesting. On November 7, 2012, senior representatives of the DOE labs sent a letter to Secretary of Energy, Steven Chu to report on a Grand Challenges Workshop on Advanced Computing for Energy Innovation held in late July – early August 2012.

While the workshop recommendations focused on what it called Technical, Structural and Incentive ‘Grand Challenges’, one of its final recommendations was to establish an Advanced Computing for Energy (ACE) program within the Department of Energy. When I read this letter, I had an intense sense of déjà vu – one of those ‘here we go again’ feelings. But in a good way.

For a moment, it felt like 1992 all over again, a year of unusually high energy and high promise in the HPC community. It’s the year we really sank our teeth into the teraFLOPS challenge. It seemed the entire community rallied in support of what the first President Bush’s science advisor, Alan Bromley, labeled the Grand Challenges – referring to high performance computing and communications. Those Grand Challenges were the challenges of science.

It was the beginning of a period of powerful government and private industry collaboration referred to as the HPCC program. I pulled this quote from the program’s overview documentation: The HPCC Program is driven by the recognition that unprecedented computational power and capability is needed to investigate and understand a wide range of scientific and engineering “grand challenge” problems.

The program’s famous “Blue Book” also made this point:

The HPCC Program is the result of several years of effort on the part of senior government, industry, and academic scientists and managers to design a research agenda to extend U.S. leadership in high performance computing and networking technologies.

So, in many ways, nothing has really changed. Again, I mean this in a good way. The 2012 appeal to address the world’s ‘Grand Challenges’ is eerily similar to what we addressed 20 years ago. HPC is an ever widening circle that keeps coming around. Twenty years ago, the Grand Challenges included climate prediction and genome mapping. Today, the great need is energy innovation and saving the environment. Tomorrow, it may be food. This is HPC and that’s how HPC works, tackling as ever the need for funding and the need for urgency to apply extreme computational resources on the greatest scientific challenges of our time.

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Video: NetApp – Scaling Storage from Seismic Depths to Sequoia Heights

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In this video from the HPC Advisory Council Switzerland Conference, Alexander Sammer from NetApp presents: Scaling Storage from Seismic Depths to Sequoia Heights. Download the slides (PDF).

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Test Your HPC Trivia Skills

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Over at the HPC Notes, Andrew Jones has posted a rather tough quiz on supercomputing topics.

Can you name these supercomputers? I’m looking for actual machine names (e.g. ‘Sequoia’) and the host site (e.g. LLNL). Bonus points for the funding agency (e.g. DOE NNSA) and the machine type (e.g. IBM BlueGene/Q).

This is going to take some detective work to win, but Jones offers some hints in his Twitter stream. Read the Full Story and Enjoy!

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