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Blue Waters Ready to Handle Floods of Data

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Big Data requires big computing, and the University of Illinois at Urbana-Champaign is doing its part with the launch of Blue Waters, one of the world’s fastest supercomputers.

U of I held an open house a couple of weeks ago, inviting one and all to visit its National Petascale Computing Facility and kick the tires on the $200 million machine built by Cray and funded by the National Science Foundation.

This is a petaflop machine designed to handle the challenging Big Data requirements associated with a wide range of problems – everything from unraveling complex biological systems to simulating the evolution of the cosmos.

This is where you go to get answers to questions about how the world works,’ says Bill Gropp, a computer science professor and one of four U of I researchers who oversaw the five-year development of the machine,” according to a story in Crain’s Chicago Business. The article goes on to say, “Blue Waters will keep the university in the lead on large-scale computing as researchers from around the country apply to the National Science Foundation to use the machine to crunch data for medical research, astrophysics, aerodynamics, weather forecasting, national security and other uses.”

This is not your everyday supercomputer. The Blue Waters system is a Cray XE/XK hybrid machine made up of AMD 6276 “interlagos” processors with a nominal clock speed of at least 2.3 GHz) and NIVIDIA GK110 Kepler accelerators, all connected by the Cray Gemini torus interconnect.

Blue Waters is capable of a sustained speed of over one petaflop, allowing it to perform more than one quadrillion calculations per second. The water-cooled system is housed in 276 black cabinets topped by silvery coolant pipes.

In addition to being really fast, Blue Waters has more than enough memory to handle Big Data requirements – 1.5 petabytes of total system memory and 300 petabytes of long-term storage.

In the Crain’s article, Gropp is quoted as saying, “We want people to ask, ‘What could you do if you could put massive amounts of data on a system and access it in microseconds?’”

The short answer is, “More than you can ever imagine.”

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Day 3 Keynote from GTC: Behind the Science in Automotive Design

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At insideHPC, we are very pleased to bring you live streaming keynotes from the GPU Technology Conference this week in San Jose.

Tune in right here on Thursday, March 21 at 11:00am PT for the next keynote as Ralph Gilles from Chrysler Group LLC presents: Behind the Science in Automotive Design.

Ralph Gilles, senior vice president – Product Design and president and CEO – SRT (Street and Racing Technology) Brand and Motorsports at Chrysler Group LLC and the mind behind some of the company’s most innovative products, will provide a behind-the-scenes look at the auto industry. Gilles will review how GPUs are used to advance every step of the automobile development process – from the initial conceptual designs and engineering phases through product assembly and marketing. He will also discuss and how Chrysler Group utilizes GPUs and the latest technologies to build better, safer cars and reduce time to market.


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Posted in Digital Manufacturing, Events, GPUs, GTC - GPU Technology Conference, HPC, HPC Hardware, Video | Leave a comment

Day 2 Keynote from GTC: Parallel Processing of the Genomes

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At insideHPC, we are very pleased to bring you live streaming keynotes from the GPU Technology Conference this week in San Jose.

In this video, Erez Lieberman Aiden from the Baylor College of Medicine presents a keynote talk entitled: Parallel Processing of the Genomes, by the Genomes and for the Genomes.

The human genome is a sequence of 3 billion chemical letters inscribed in a molecule called DNA. Famously, short stretches (~10 letters, or “base pairs”) of DNA fold into a double helix. But what about longer pieces? How does a 2 meter long macromolecule, the genome, fold up inside a 6 micrometer wide nucleus? And, once packed, how does the information contained in this ultra-dense structure remain accessible to the cell? This talk will discuss how the human genome folds in three dimensions, a folding enables the cell to access and process massive quantities of information in parallel. To probe how genomes fold, we developed Hi-C, together with collaborators at the Broad Institute and UMass Medical School. Hi-C couples proximity-dependent DNA ligation and massively parallel sequencing. To analyze our data and reconstruct the underlying folds, we, too must engage in massively parallel computation. I will describe how we use NVIDIA’s CUDA technology to analyze our results and simulate the physical processes of genome folding and unfolding.


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Tuesday Keynote from GPU Technology Conference

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In this video, Nvidia’s CEO Jen-Hsun Huang kicks off the GTC Conference with a talk on What’s Next in GPU Technology.

Short on time? In this video, we’ve grabbed the HPC section of the keynote for your viewing pleasure.

At insideHPC, we are very pleased to bring you live streaming keynotes from the GPU Technology Conference all this week from San Jose. Tune in right here on Wednesday, March 20 at 11:00am PT for the next keynote from Erez Lieberman Aiden from the Baylor College of Medicine.

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Posted in Cuda, Events, GPUs, GTC - GPU Technology Conference, HPC, HPC Hardware, HPC Software, Video | Leave a comment

Video: Justin Rattner IDF Keynote on Connecting to the Future

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In this video, Intel CTO Justin Rattner presents Connecting to the Future at the company’s 2012 IDF Developer Forum event in San Francisco.

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Video: Does the TOP500 Need to Evolve?

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In light of the recent controversy over the validity of the TOP500, I thought it would be good to reprise this interview with Sharan Kalwani on why he thinks the benchmark needs to evolve to catch up with modern HPC. And while this 2011 interview originally appeared on TOP500.org, that page (pictured below) has somehow vanished.


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Posted in HPC, Video | 5 Comments

Thursday, Nov 14 Livestream: GPU Technology Theater from SC12

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Starting at 10:30 am MDT today (Nov. 15), insideHPC will be streaming live presentations from the Nvidia GPU Technology Theater at SC12.

GPU Technology Theater Schedule @ SC12
(Booth #2217)
Thursday, November 15, 2012

  • 10:30 Tesla Cluster Monitoring APIs, Robert Alexander, Nvidia
  • 11:00 CARMA: CUDA on ARM, Don Becker, Nvidia
  • 11:30 CUDA Fortran 2013, Brent Leback, The Portland Group
  • 12:00 Hybrid HPC, Thomas Schulthess, Swiss National Supercomputing Center
  • 12:30 Accelerated ANSYS Fluent, Robert Strzodka, Nvidia
  • 13:00 Using CAPS Compilers on GPUs, Francois BodinCAPS
  • 13:30 Introduction to CUDA C/C++, Mark Ebersole, Nvidia
  • 14:00 New Features in CUDA 5, Mark Harris, Nvidia
  • 14:30 Inside the Kepler Architecture, Stephen Jones, Nvidia

Download the Full Schedule (PDF) and be sure to check out our live postings from the show every day this week.

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Wednesday, Nov 14 Livestream: GPU Technology Theater from SC12

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Live broadcast by Ustream

Starting at 10:30 am MDT today (Nov. 14), insideHPC will be streaming live presentations from the Nvidia GPU Technology Theater at SC12.

GPU Technology Theater Schedule @ SC12
(Booth #2217)
Wednesday, November 14, 2012

  • 10:30 New Features in CUDA 5 , Mark Harris, Nvidia
  • 11:00 Fast Simulations of Fast Processes, Michael Bussmann, HZDR
  • 11:30 Exotic Nuclear Matter, Balint Joo, Thomas Jefferson National Lab
  • 12:00 Progress on Exascale , William Tang, Princeton Plasma Physics Lab
  • 12:30 Molecular Dynamics with GPUs, W. Michael Brown, ORNL
  • 13:00 Performance on Cray XK Systems, Luiz DeRose, Cray
  • 14:00 CUDA: Past, Present and Future , Ian Buck, Nvidia
  • 14:30 Preparing S3D for Titan, Ray Grout, NREL
  • 15:00 NVIDIA Application Lab at Jülich , Dirk Pleiter, Jülich
  • 15:30 Accelerating Science, Wen-mei Hwu, NCSA
  • 16:00 LES Wind Simulation, Takayuki Aoki, Tokyo Institute of Technology
  • 16:30 PGI Accelerator Compilers , Michael Wolfe, The Portland Group
  • 17:00 Titan for Transformational Materials , Markus Eisenbach, ORNL
  • 17:30 Challenges of Exascale, Bill Dally, Nvidia

Download the Full Schedule (PDF) and be sure to check out our live postings from the show every day this week.

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Tuesday, Nov 13 Livestream: GPU Technology Theater from SC12

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Live broadcast by Ustream

Starting at 10:30 am MDT today (Nov. 13), insideHPC will be streaming live presentations from the Nvidia GPU Technology Theater at SC12. They have an amazing lineup of speakers, and while they encourage you to come to booth #2217 and see for yourself, the company also wants to reach out to the many people who could not attend the show this year.

GPU Technology Theater Schedule @ SC12
(Booth #2217)
Tuesday, November 13, 2012

  • 10:30 Inside the Kepler Architecture, Stephen Jones, Nvidia
  • 11:00 Big Data Astronomical Data, Amr Hassan, Swinburne University
  • 11:30 Real-time Triggering Using GPUs, Felice Pantaleo, CERN
  • 12:00 Lattice Quantum Chromodynamics, Justin Foley, University of Utah
  • 12:30 FIM and NIM Weather Models, Mark Govett, NOAA
  • 13:00 OpenACC, John Urbanic, PSC
  • 13:30 Turbulence Visualization, Marc Treib, Technische Universität München
  • 14:00 MAGMA Linear Algebra Libraries, Jack Dongarra, University of Tennessee
  • 14:30 Beyond Tsubame 2.0, Satoshi Matsuoka, Tokyo Institute of Technology
  • 15:00 CUDA Development w/ NVIDIA Nsight , David Goodwin, Nvidia
  • 15:30 CUDA-Accelerated Libraries, Levi Barnes, Nvidia
  • 16:00 Thrust Parallel Algorithms Library, Thomas Bradley, Nvidia
  • 16:30 Compiling Parallel Languages w/ Numba, Mark Harris, Nvidia
  • 17:30 Improving Engineering Productivity, Ray Browel, ANSYS

Download the Full Schedule (PDF) and be sure to check out our live postings from the show every day this week.

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Livestream: GPU Technology Theater from SC12

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Live broadcast by Ustream

Starting at 7:00 pm MDT Tonight, (Nov. 12), insideHPC will be streaming live presentations from the Nvidia GPU Technology Theater at SC12. They have an amazing lineup of speakers, and while they encourage you to come to booth #2217 and see for yourself, the company also wants to reach out to the many people who could not attend the show this year.

GPU Technology Theater Schedule @ SC12
(Booth #2217)
Monday, November 12, 2012

19:30 Inside the Kepler Architecture , Stephen Jones, Nvidia
20:00 Evolution of GPU Computing , Steve Scott, Nvidia
20:30 Titan: ORNL’s New Computer , Buddy Bland, ORNL

Download the Full Schedule (PDF) and be sure to check out our live postings from the show every day this week.

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Posted in Events, GPUs, HPC, HPC Hardware, SC12, Video | Leave a comment

Video: Mira Super Gears up for Largest Universe Simulation Ever

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Our Video Sunday feature continues with this preliminary simulation of the cosmic web. Sometime next month, the Mira supercomputer will complete tests of its new upgraded software and begin running the largest cosmological simulations ever performed at Argonne National Laboratory.

These simulations are massive, taking in huge amounts of data from the latest generation of high-fidelity sky surveys and crunching it into models of the universe that are larger, higher-resolution, and more statistically accurate than any that have come before. When it’s done, scientists should have some amazing high-quality visualizations of the so-called “cosmic web” that connects the universe as we understand it. And they’ll have the best statistical models of the cosmos that cosmologists have ever seen.

Read the Full Story.


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Webinar: Storage Solutions for Big Data Apps

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Mellanox and DDN will host an August 23 webinar on the concepts, challenges and performance options for Big Data analytics applications.

This webinar will explore methods for minimizing latency and accelerating Big Data processing, analytics, and distribution using high performance, InfiniBand-connected storage systems, specifically in web scale data centers. We will review the network and system factors influencing performance today, and present storage and interconnect solutions that minimize process latencies, decrease time to results and increase ROI for Big Data applications.

Register now.


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Posted in HPC, HPC Hardware, Network, Storage | Leave a comment

Infographic: A Brief History of Supercomputers

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The HPC4Energy blog brings us this infographic on the history of supercomputing. Download the infographic (PDF).


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Researchers Encouraged to take XSEDE Cloud Use Survey

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The good folks at XSEDE are conducting a Cloud Use Survey for educators and researchers.

We encourage researchers and educators to participate in the XSEDE Cloud Use Survey so that the National Science Foundation and XSEDE management can better understand cloud use cases and plan accordingly for the seamless integration of cloud resources into the XSEDE architecture,” said John Towns, PI and Project Director for XSEDE.

The survey results will be included in an XSEDE Cloud Study report. Read the Full Story.

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Agenda Posted: HPC Advisory Council Spain Conference, Sept. 13 in Malaga

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The HPC Advisory Council has published the agenda for their upcoming Spain workshop. The one-day event takes place in Malaga, Spain on Sept. 13.

Co-hosted by the University of Barcelona, the conference will focus on HPC systems, high-speed networks, parallel I/O, communications libraries, GPU computing, and Exascale technologies.

Continuing our successful international conference programs, the HPC Advisory Council Spain Supercomputing Conference is expected to uphold our tradition of providing rich educational content, taught from some of the industry’s most recognized luminaries and scientists,” said Gilad Shainer, chairman of the HPC Advisory Council. “High-performance computing is critical for enhancing science, research and product development. Our conference attendees will gain the knowledge on how to best leveragehigh-performance computing for such activities and how to better leverage HPC system capabilities and improve productivity and efficiency.”

Attendees are also invited to attend the RES User Conference on Seot. 12. Register now.


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Posted in Events, GPUs, HPC, HPC Advisory Council Workshop, HPC Hardware, Network | Leave a comment

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