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ClusterVision Partners to Deploy Minerva Supercomputer at the University of Nottingham

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This week ClusterVision announced that the company and its partners have completed the deployment of a new HPC system at the University of Nottingham. The 45 Teraflop “Minerva” supercomputer will be used to drive academic research in a wide range of scientific disciplines.

As the prime contractor for the design, build and management of the Minerva system, ClusterVision managed a complex collaboration of 17 hardware and software partners. Key contributors to the Minerva project included Dell, Intel, Qlogic, Nvidia, Panasas, Bright Computing, Altair Engineering and Allinea.

The Minerva system comprises 2 redundant master nodes; Dell PowerEdge R720’s, with a single master node shared storage provided by the 2U 12 disk Dell PowerVault MD3200. The compute capacity is shared between 156 Dell PowerEdge nodes, arranged in Dell C6220 servers, with 12 high memory fast I/O nodes also in Dell 6220’s, and 6 additional GPU accelerated nodes. Originally designed using C6100 servers, the Dell compute node specification was subsequently upgraded to Dell PowerEdge C6620’s which were introduced as a vehicle for the latest Intel Xeon E5 Sandy Bridge processors. Each 2.6 Ghz compute unit contains a 500 GB local disk. The fast I/O nodes have 500 GB SATA and 4 100 GB SSD’s and are designed specifically for the high intensity needs of the applications. The 6 GPU accelerated nodes comprise a Supermicro base chassis, also incorporating the 8-core Intel Xeon E5 processor, together with 2 Tesla M2090 series GPU’s from NVIDIA.

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Video: Dell’s PowerEdge C8000 for HPC

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In this video, Dell’s Armando Acosta describes how the PowerEdge C8000 is a good fit for HPC applications.

PowerEdge C servers have higher performance per watt, performance per U and performance per dollar than its closest competitor. Designed for performance and efficiency, PowerEdge C servers have a shared infrastructure: sharing chassis, fans and power supplies across up to 4 server nodes in a 2U to lower TCO by approximately 20%.


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Dell’s New High Density Server a House of Kepler

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Nvidia’s Geoff Ballew writes that Dell’s new line of high-density PowerEdge servers are designed for a range of high-volume, enterprise HPC, Big Data” and hosting applications. The new systems will support Nvidia’s new Tesla K20 GPU accelerators, which are based on the Kepler architecture.

The PowerEdge C8000 series will initially ship with Fermi-based Tesla M2090 GPUs. Future systems will offer the next-generation Tesla K20 GPUs – the same GPUs that will power supercomputers such as the world-leading Titan system at Oak Ridge National Labs, the Blue Waters system at the National Center for Supercomputing Applications at the University of Illinois at Urbana-Champaign, and the Stampede system at the Texas Advanced Computing Center.

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Dell Speeds Up NFS Storage for HPC

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Over at the Dell HPC blog, Xin Chen writes that Dell’s new NFS storage solution is capable of 4000MB/s throughput while maintaining High Availability.

 

With the help of the PowerEdge R620 and FDR InfiniBand network connection, the NSS4-HA solution now achieves sequential read peak performance up to 4058 MB/sec!

  • Sequential read/write performance: about 75 percent increment on average; most of the improvement is with sequential reads. The write performance does not change much between the current and previous release, as the RAID 6 write performance is largely determined by the storage system itself (disk drives in the storage subsystem are configured with RAID 6).
  • Random read/write performance: about 17 percent increment for random writes and 23 percent increment for random reads on average.
  • Metadata operation performance: the increment on average is more than 20 percent for file create, stat, and remove operations.


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Dell Taps Mellanox to Accelerate Blade Performance

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This week Mellanox announced that Dell is using the company’s 10/40 Gigabit Ethernet and FDR InfiniBand solutions to up performance and flexibility of M620 blade servers.

Mellanox solutions are the core interconnect across data centers integrating servers, storage systems and users with industry leading performance. With today’s announcement, customers can order new Dell M620 blade servers equipped with Mellanox FDR 56Gb/s InfiniBand switch blades and ConnectX®-3 PCIe 3.0 FDR 56Gb/s InfiniBand and 10/40GbE mezzanine adapters. The new Dell PowerEdge blade server and Dell M1000e blade chassis have been designed to take full advantage of Mellanox’s FDR 56Gb/s InfiniBand and 40GbE PCIe 3.0-compliant adapters, which can offer up to double the I/O throughput versus older generation technologies.

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Dell Spikes Xeon E5/R Servers with Nvidia GPUs

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Today Nvidia announced that, for the first time ever, the company’s GPUs will be available in Dell PowerEdge rack and tower servers. Tailor-made for technical computing, the new servers combine 512-core Nvidia Tesla M2090 GPUs with the latest Intel Xeon E5/R CPUs based on the Sandy Bridge microarchitecture.

GPU computing is growing in demand and adoption based on its ability to provide a unique combination of ultra-high performance and energy efficiency,” said Virginia Swink, executive director of Dell Server Solutions. “Integrating accelerator technologies in Dell’s PowerEdge portfolio opens up new usage models, and extends our ability to deliver more cycles to a broader base of scientific and commercial users.”

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Posted in Business of HPC, Collaborations, Compute, GPUs, HPC, HPC Hardware | 1 Comment

Dell Smart Containment Racks Keep the Cool Air Where You Need It

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Power and cooling efficiency is an ever-increasing concern in HPC datacenters. Among the top-tier vendors, Dell in particular has been focusing on this area as a way to differentiate it’s product offerings. The company’s new PowerEdge Energy Smart Containment Rack Enclosures are a good example, as they provide a cost-effective stand-alone cold-air containment solution for raised-floor data centers.

Since a typical raised-floor implementation without containment distributes cold air into the whole room, it may be necessary to overprovision the airflow by 2-3x in order to provide enough air to the installed equipment. Even then, hot and cold air may mix, meaning warm air may be ingested by some systems or hot spots may form in some areas. Containment is a growing industry trend to address these issues but, unlike other containment systems (like aisle containment), the Energy Smart Rack can deploy one at a time, anywhere in the data center, without impacting facilities such as on-site fire-suppression systems. Just position it over a well-ventilated tile and install your IT equipment – the airflow from the raised floor is directed into the sealed front plenum for even distribution to all of the mounted systems. And, with the air delivery contained, the Energy Smart rack can support high-density and cloud-computing installations, up to 25kW of IT equipment at 25°C per rack.

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NCSA Fires Up Heterogeneous Forge Super

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NCSA has now powered up Forge, a 153 teraflop heterogeneous supercomputer for use by scientists and engineers across the country. The system features Dell PowerEdge C6145 servers (AMD Opteron Magny-Cours 6136 2.4 GHz dual-socket eight-core) accelerated by NVIDIA Tesla M2070 GPUs.

Seventy percent of the compute time Forge offers will be allocated through the National Science Foundation’s Extreme Science and Engineering Discovery Environment (XSEDE) program. XSEDE, a cross-country partnership of nearly 20 institutions, is led by NCSA and provides digital resources, services, tools, and support to the nation’s science and engineering research community. The remaining 30 percent of Forge’s cycles will be allocated to NCSA’s Private Sector Program and to faculty, staff, and students at the University of Illinois at Urbana-Champaign.

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Forge Super to Fire Up GPUs at NCSA

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NCSA's Jim Long installing components for Forge

A new 153-teraflop supercomputer called Forge is being deployed at NCSA. The GPU-powered system is expected to enter production by July 1.

Forge will combine 18 Dell PowerEdge C6145s that contain 36 nodes of dual-socket/eight-core AMD processors, with M2070 NVIDIA Fermi GPU units housed in Dell’s C410x PCI expansion enclosures; there are eight Fermi units for each node, for a total of 288. Each NVIDIA M2070 provides more than 500 gigaflops of double-precision performance and 6GB of GDDR5 memory. A QDR InfiniBand interconnect fabric will interconnect the nodes; 700 terabytes of GPFS filesystem space will be provided by two Data Direct Networks SFA 10000 units. The I/O bandwidth of the system is expected to exceed 16GB/sec.


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Posted in GPUs, HPC, HPC Hardware, New Installations | 1 Comment

Dell GPU Chassis Adapts with Your Applications

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Dell’s Jeff Layton writes that, as GPU applications and tools evolve, your hardware configurations need to be flexible in order to remain cost effective. To allow you to adapt as applications change, Dell has separated the GPUs from CPUs so you can vary the number of GPUs per node and how they are connected.

Dell has developed a unique external PCIe chassis that allows you to put GPUs in a separate chassis that is optimized for the high power and cooling requirements of GPUs. This chassis, called the C410x, can be connected to host nodes via HIC cards and PCIe cables according to your requirements. This means that you can upgrade/change the host nodes or the GPUs independent of one another.


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NASA Doubles Down With Dell Westmere Super

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The NASA Center for Climate Simulation (NCCS) newest computational tool went online this month. Dubbed “Discover,” this 14,400-processor Dell PowerEdge C6100 cluster features 320 TFLOPs of power.

Our vendor partners Dell, Intel, Mellanox, Coolcentric, and Force10 went the extra mile in building an innovative computing system that equals all of Discover’s previous resources but uses less than 40 percent of the space and only 45 percent of the electricity,” said Phil Webster, NCCS project manager and chief of the Computational and Information Sciences and Technology Office at NASA Goddard Space Flight Center. “The expanded capabilities are supporting NASA contributions to international climate science programs as well as advancing the state-of-the-art in modeling and simulation.”

Used primarily for climate studies, Discover uses current-generation Intel Xeon 5600 “Westmere” (2.8 GHz) processor technology, 28.8 terabytes of memory, and a 40 gigabit-per-second InfiniBand network.

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Vendors Roll out Intel Xeon E7 Servers for 30-40 Percent Speed Bump

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Last week a host of HPC vendors rolled out new servers based on Intel’s latest “Westmere” 10-core Xeon E7 processors. As the high end of Intel’s X86 line, the E7 processors are a bit on the spendy side, so they are really targeted at applications that benefit from maximum core-count and memory size:

  • Supermicro launched an 8-Way 80-Core SuperServer with up to 2 TB of DDR3 memory (64 DIMMs), 10 PCI-E Gen 2.0 expansion slots, (2+2) redundant Gold Level power supplies, and up to 24 2.5” hard drives in 5U chassis.
  • AMAX announced that their ServMax H Class 4-way and 8-way HPC servers, which use the E7′s 2.67GHz performance and turbo boost technology to “achieve even faster speeds, with up to 40% performance improvement for data-intensive software applications such as ANSYS, AMBER 11, Jacket and 3ds Max.”
  • Dell rolled out Poweredge servers with up to 40 cores and 2TB of memory.
  • HP stepped up with new E7 blade servers and an 8-socket, 80-core beast of a server that supports up to 4TB of RAM.
  • SGI announced a performance gain of up to 35% on the SGI Altix UV server line based on the Intel Xeon processor E7 product family. The Altix UV offers full-scale 256 socket support for the highest performing 130W processors.

In the wake of the announcement, Intel has published a number of eye-opening benchmarks on the Xeon E7 processors.

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Video: Dell Packs 96 Cores in 2U Chassis

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With AMD’s announcement of new Magny-Cours processors comes word of a new Dell server that packs an unprecedented amount of compute power in a 2U chassis.

The PowerEdge C6145 comprises two independent 4-socket server nodes in a 2U chassis with the latest AMD Opteron 6000 processors, which enables greater performance per node while reducing space, weight and consuming less energy. Further, customers can scale up to 96 cores, up to 1TB memory, and expanded I/O to quickly compile data and results, and connect to other resources.


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