As the first recipient of the PRACE Ada Lovelace Award for HPC, Dr Zoe Cournia was selected for her outstanding contributions and impact on HPC in Europe on a global level. “Using the PRACE HPC resources and recent advances in computer-aided drug design allow us to develop drugs specifically designed for a given protein, shortening the time for development of new drugs,” says Dr Cournia. “I believe that our work is a good example of how computers help develop candidate drugs that have the potential to save millions of lives worldwide. I am honored to receive this prestigious award and hope that this serves as inspiration to other female researchers in the field.”
In this video, Steven Pawson discussed how NASA uses computer models to build up a complete three-dimensional picture of El Niño in the ocean and atmosphere. Pawson is an atmospheric scientist and the chief of the Global Modeling and Assimilation Office at NASA’s Goddard Space Flight Center in Greenbelt, Maryland.
The Intel HPC Developer Conference has issued its Call for Proposals. Held in conjunction with SC16, the event takes place Nov. 12-13 in Salt Lake City.
Do you have new technology that could disrupt HPC in the near future? There’s still time to get free exhibit space at SC16 in November. “At the SC16 Emerging Technologies Showcase, we invite submissions from industry, academia, and government researchers.
Are you looking at how to deliver HPC services through the Cloud? The CloudLightning Project in Europe is seeking your input on a new survey.
“The data that I presented from the Sanger Institute is typical of the profiles that we come across: a mix of good streaming IO (ie the larger reads), but unexpectedly high numbers of small reads and writes. These small reads and writes are potentially harmful to the file system. We’ve profiled HPC applications in various different life sciences organizations, not just the Sanger Institute, and we’ve found these IO patterns throughout. We’ve also seen similar IO patterns in EDA and oil and gas applications.”
NASA Ames reports that SGI has completed an important upgrade to Pleiades supercomputer. “As of July 1, 2016, all of the remaining racks of Intel Xeon X5670 (Westmere) processors were removed from Pleiades to make room for an additional 14 Intel Xeon E5-2680v4 (Broadwell) racks, doubling the number of Broadwell nodes to 2,016 and increasing the system’s theoretical peak performance to 7.25 petaflops. Pleiades now has a total of 246,048 CPU cores across 161 racks containing four different Intel Xeon processor types, and provides users with more than 900 terabytes of memory.”
Hadoop has a reputation for being extremely difficult to install and configure, but that seems to be changing. In this video, Bright Cluster Manager for Big Data is used to install Cloudera 5.3.1 with YARN failover in just five minutes.
Today SGI announced Zero Watt Storage, a powerful extension to its SGI DMF data management platform designed to meet growing customer demands for managing critical data. This solution was developed by SGI to offer its DMF customers fast, disk-based access to their near line data that significantly outperforms cloud storage in terms of costs and access speed up to 5X.
Today Mellanox announced the availability of new software drivers for RoCE (RDMA over Converged Ethernet). The new drivers are designed to simplify RDMA (Remote Direct Memory Access) deployments on Ethernet networks and enable high-end performance using RoCE, without requiring the network to be configured for lossless operation. This enables cloud, storage, and enterprise customers to deploy RoCE more quickly and easily while accelerating application performance, improving infrastructure efficiency and reducing cost.