ISC’13 Issues Call for Abstracts

 

The ISC’13 conference has issued its Call for Abstracts and Tutorial Proposals. The deadline for the research paper abstract submission is Sunday, January 27, 2013 and the tutorial proposals are to be submitted by Sunday, February 10, 2013.

ISC will issue the following awards for the most outstanding papers.

  • The Gauss Award consisting of 3,000 Euro, which will be assigned to the most outstanding paper in the field of scalable supercomputing.
  • The PRACE Award, which will be awarded to the best paper submitted to the ISC Research Paper Session and the PRACE Scientific Conference on topics of HPC.

Other Submission Deadlines:

  • Call for Posters: Sunday, February 10, 2013
  • Call for BoFs: Sunday, February 10, 2013



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Video: Intel Xeon Phi Coprocessor Overview at SC12

 

In this video from the Adaptive Computing booth theater at SC12, Mike Haedrich from Intel presents an overview of the Intel Xeon Phi coprocessor.

The latest version of Moab was designed to recognize and work with the new Intel Xeon Phi coprocessors, based on the Intel Many Integrated Cores (MIC) technology. This ability to automatically detect Intel Xeon Phi coprocessors– and determine their location and availability – improves processor utilization to more intelligently schedule jobs and removes the need for extensive reprogramming to integrate Intel Xeon Phi coprocessors into existing systems. It also allows for policy-based scheduling, optimizing the choice of accelerators and coprocessors. As Intel Xeon Phi coprocessors are introduced into existing systems, this keeps costs and management efforts at a minimum, while maximizing utilization to ensure the most efficient job processing – by utilizing metrics including the number of cores and hardware threads, physical and memory available (total and free), max frequency, architect and load.

Read the Full Story.



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A Look at FutureGrid Three Years On: Management Made Easy

 

What is the best way to manage an HPC cluster serving a multi-user tenant base? We asked David Gignac, Senior Systems Administrator at the Texas Advanced Computing Center (TACC). David is responsible for managing “Alamo,” a 96-node cluster that’s part of FutureGrid, a high-performance grid test bed for new approaches to distributed computing. Funded by the National Science Foundation, FutureGrid comprises 920 nodes distributed across eight clusters at sites in the U.S. and Germany, including TACC. Gignac has managed Alamo for three years as part of the five year FutureGrid study, giving him unique insight into the challenges of managing an advanced multi-user tenant HPC cluster.

insideHPC: What do you do for FutureGrid?

David Gignac: The FutureGrid Project is a distributed test bed for software developers and systems administrators focused on grid and cloud computing. It is designed to better understand the behavior of various cloud computing approaches, and to allow researchers to tackle complex projects. Anyone interested in testing code can join the effort and request FutureGrid resources online. Researchers may request up to five nodes configured with a specific kernel to test distributed file systems. A single request may specify 20 different components of software. To meet their specific requirements, I generate a new image with each request. The crucial part of my job is capturing an image of each configuration, so the user can get back to the place they started when the system is rebooted.

insideHPC: What do you do when you’re not managing FutureGrid?

David Gignac: In addition to FutureGrid, I am also responsible for managing more than 2,600 servers for a variety of other research projects at TACC. As with any network administrator, there are only a certain number of boxes I can realistically manage effectively. When you talk about clusters, the management requirement goes through the roof. I need to have a good solution to help me manage this complexity.

insideHPC: How do you keep up?

David Gignac: I depend on good cluster management applications. When I took on administration for Alamo, I reviewed a number of advanced management suites. With all of my other responsibilities, my top criterion was minimizing the amount of time I spend managing each cluster. I looked at cluster management software from all the major vendors including Bright Cluster Manager, Cobbler/LOSF, Platform Computing products, Rocks and xCat.”

insideHPC: How did you choose the cluster management solution for Alamo?

David Gignac: My decision was based on minimizing the time required to manage the cluster: automatic time-consuming tasks and reducing complexity— balanced with providing a high level of service to our users. Drilling down, I needed a solution that would minimize the number of custom scripts I was required to write and something that would provide maximum ‘at a glance’ visibility into the health and operations of each cluster. In addition, I looked for something that would integrate seamlessly with Alamo’s job schedulers: Moab, Torque, Slurm and SGE; yet is nimble to accommodate simultaneous requests from researchers. In the end, I selected Bright Cluster Manager.

insideHPC: Three years later, how’s it going?

David Gignac: It’s been a great run. Bright and Fedora EPEL distros have saved a tremendous amount of time for me. Bright’s image-based provisioning lets me reconfigure Alamo on the fly to meet the specific needs of each researcher’s compute jobs. I click on a check box and the cluster management suite installs a server, sets up a client and I’m done. Further, Bright’s ease of use and full integration with job schedulers have produced major time savings. I don’t need to spend hours writing and maintaining scripts because everything just works. I get dedicated product support, so I don’t waste time searching forums and message boards for answers. In addition, I can easily reproduce any testing environment in minutes and rapidly deploy a new environment.

insideHPC: What’s next?

David Gignac: Cloud bursting. I think there’s an opportunity to experiment with hybrid cluster solutions. Bright lets me manage on-premise and remote cloud-based clusters seamlessly. It all looks the same through the management suite portal. I want to work with FutureGrid participants to test it in the program’s next two years.

insideHPC: And in your free time?

David Gignac: I certainly have more of that now, in spite of all the clusters I manage. Because of the time savings, I am spending more time making improvements on the clusters.



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Slidecast: NetApp – Big Data and HPC

 

In this slidecast, Richard Treadway and Rich Seger from NetApp discuss the company’s storage solutions for Big Data and HPC. The company’s HPC solutions for Lustre support massive performance and storage density without sacrificing efficiency.

Download the MP3 * Download the slides (PDF)Subscribe on iTunes * If Dropbox is blocked, download audio from Google Drive.



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Job of the Week: Information Systems Manager at University of Houston

 

The University of Houston is seeking a Information Systems Manager in Computer Science in our Job of the Week.

There is currently an opening in the HPCTools Research Lab for a dedicated professional to serve as lab manager. We are seeking an accomplished, dynamic individual with a track record of professional achievement to manage the project activities in our group and to lead our compiler development efforts. The ideal candidate is required to have a sound background in HPC and computer science. Good communication and technical writing skills are a must.


Are you paying too much for your job ads? Not only do we offer ads for a fraction of what the other guys charge, our insideHPC Job Board is powered by SimplyHIred, the world’s largest job search engine.

As a reminder, we are offering FREE job listings for .EDU and .GOV domains, so email us at info @ insideHPC.com for a special discount code.



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Video: Argonne to Lead Energy Storage Hub for 5X Better Batteries

 

Our Video Sunday feature continues with this press conference by U.S. Secretary of Energy Steven Chu announcing that Argonne National Laboratory has been selected for an award of up to $120 million over five years to establish a new Batteries and Energy Storage Hub. The Hub, to be known as the Joint Center for Energy Storage Research, will combine the R&D firepower of five DOE national laboratories, five universities, and four private firms in an effort aimed at achieving revolutionary advances in battery performance.

The goal of this effort is to deliver battery technology with 5X more capacity and efficiency in five years. Imagine a Nissan Leaf vehicle with a range of 500 miles on a charge or a solar-powered battery backup for your home for less than $10K.

This is a partnership between world leading scientists and world leading companies, committed to ensuring that the advanced battery technologies the world needs will be invented and built right here in America,” said Secretary Chu. “Based on the tremendous advances that have been made in the past few years, there are very good reasons to believe that advanced battery technologies can and will play an increasingly valuable role in strengthening America’s energy and economic security by reducing our oil dependence, upgrading our aging power grid, and allowing us to take greater advantage of intermittent energy sources like wind and solar.”

Advancing next generation battery and energy storage technologies for electric and hybrid cars and the electricity grid are a critical part of President Obama’s all-of-the-above energy strategy to reduce America’s reliance on foreign oil and lower energy costs for U.S. consumers. And HPC will make it possible. Amazing. Read the Full Story.



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Volunteer Compute Cycles at GPUGrid.Net are Fighting HIV

 

Clipped from http://www.gpugrid.net/

Over at EE Times, Sylvie Barak writes that a grid of GPUs is being used to fight the battle against AIDS and the HIV virus. At the Hospital del Mar Medical Research Institute and UPF in Barcelona, researchers have been using GPUGRID.net, a voluntary distributed computing platform leveraging GPU accelerators to deliver “virtual supercomputing” performance to examine how a protein responsible for the maturation of the virus releases itself to initiate infection.

GPUs have been crucial,” said Dr. Gianni De Fabritiis, lead researcher, explaining that without them it would have been very difficult to simulate such slow biological processes from an atomistic point of view. “It allows to get us closer to biology and see how proteins work,” he said.

Dr. De Fabritiis added that having a structural picture of this step in HIV maturation was important because it facilitated being able to perform drug design on it. Read the Full Story.



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Demo: Altair RADIOSS Finite Element Analysis on Intel Xeon Phi at SC12

 

In this video from SC12, Eric Lequiniou, Director of High Performance Computing at Altair demonstrates a port of RADIOSS to the new Intel Xeon Phi that uses both explicit and implicit solvers.



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DDN Announces $100K WARP Prize for Big Data Innovation

 

DDN has launched a $100,000 prize to recognize scientific breakthroughs enabled by high performance computing with major research institutions pledging their support. The global program focuses on scientific advancement and insight through the exploration of novel approaches to Big Data analysis, Exascale processing, cloud computing, memory-class storage and other emerging developments in HPC.

For more than 12 years, DDN’s leading-edge storage solutions for content-intensive computing have helped universities around the world redefine the boundaries of science and research,” said Alex Bouzari, CEO and cofounder, DDN. “With WARP, we will accelerate the incredible changes of the Big Data era by bringing together the best minds in our industry, and also by providing needed support to the next generation of groundbreaking researchers.”

In conjunction with the WARP program, the company also announced $100,000 in annual prizes to recognize emerging scientific breakthroughs enabled by technology, including a $75,000 first prize and a $25,000 second prize each year. A WARP board of advisors will be established to influence the direction of the WARP program and to select the annual WARP Prize winners. Read the Full Story.

A Tip of the Hat goes out to Suhaib Khan for this photo of DDN’s WARP slide from the Saudi Arabian HPC Conference at KAUST. The event is going on all weekend, and you can follow his Twitter Event Coverage with hastag #SAHPC.



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Video: Steve Simms on the Data Capacitor II at Indiana University

 

In this video from SC12, Steve Simms from Indiana University describes a recent upgrade to the Data Capacitor project, a high-speed, high-capacity storage facility for very large data sets. With 5 PB of storage, Data Capacitor II will support big data applications used in computational research. IU partnered with DataDirect Networks (DDN) to develop Data Capacitor II, which is scheduled to be installed in the IU Data Center in spring 2013.



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AMD: x86 to Remain Viable for Decades

 

Will the ARM architecture eventually take over the server market? Over at Xbit Labs, Anton Shilov writes that AMD expects the x86 architecture to continue for decades.

There are no doubts that x86 is going to be a huge portion of our business. I think that it is going to be an important segment of our business for 5 – 10+ years. The x86 is going to be here long after I am retired. […] There will be x86 applications just like there are mainframe applications today, 25 – 30 years later. That is not going to fundamentally change,” said Rory Read, chief executive of AMD, at Credit Suisse Technology Conference earlier this week.

Read the Full Story.



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Colfax Offers Powerhouse Xeon Phi Server and Code Optimization Course at SC12

 

In this video from SC12, Mike Fay from Colfax International describes the company’s new CXP9000 server with up to eight Intel Xeon Phi coprocessors. After that, Vardim Karpusenko provides an overview of the company’s new training courses on optimizing code for Xeon Phi.

Thanks to our close relationship with Intel and engagement in the early testing program, Colfax is uniquely qualified and positioned to provide a complete portfolio of products to support the Intel Xeon Phi coprocessor.”

Read the Full Story.



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Podcast: Radio Free HPC looks at Consolidation in the Supercomputing Industry

 

In this podcast, the Radio Free HPC team regroups after SC12 to discuss an industry trend that was in evidence at the show: vendor consolidation.

  • Cray just acquired Appro
  • Intel acquired Qlogic Truescale InfiniBand, Whamcloud, and Cray interconnect IP
  • IBM bought Platform
  • Xyratex bought ClusterStor
  • Hitachi acquired BlueArc
  • NetApp bought Engenio storage
  • And so on…

The guys discuss how acquisitions need to be integrated the ‘right’ way and how it’s more than just slapping up new logos on websites and combining slide decks. They also talk about some cautionary tales in the world of tech acquisitions along with some success stories. Dan offers a success story: IBM and Platform. Rich predicts which major vendor will next be swallowed whole; Henry predicts a challenge to Intel’s x86 dominance.

In “SC After Hours” chatter, Dan describes “My Dinner With Henry” in Salt Lake City, and Rich is accused of being the biggest Apple fanboi in all of HPC and, perhaps, the world. Watch for a special cameo appearance by someone who knows all about buyouts: Larry Ellison.

Download the MP3Download the videoSubscribe on iTunesRSS Feed



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RunMyCode Lets Scientists Share Code and Results

 

Over at International Science Grid this Week, Adrian Giordany writes that scientists can now share their code & data along with results using RunMyCode.

Donoho says that RunMyCode will make a real impact by conveniently enabling others to reproduce computations without needing the exact software and computer. “You can even use it from a phone or tablet. It might become for computations what ArXiv.org has become for articles,” says Donoho. Currently, the RunMyCode platform is suited to smaller data sets and scripts. The team is working on handling larger code bases and complicated data sets so they can support any published work.

Read the Full Story.



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Interview: SGI Teams with Altair on the Road to Exascale

 

In this video from SC12, Paul Kinyon from the SGI product management team describes how the company is working with partners like Altair to solve customer’s toughest computational challenges. The company is looking at a range of technologies that could enbable Exascale computing capabilities at a practical level of power consumption.



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