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An Interview with Jack Wells, Oak Ridge National Laboratory

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By Mike Bernhardt, Editor of The Exascale Report

Oak Ridge National Laboratory (ORNL) has been to the winner’s circle on numerous occasions. But the Jaguar supercomputer, to date, has been one of their best victories, not only for ORNL, but for Cray, AMD and at a much larger level, U.S. technology competitiveness.

Less than a month ago, ORNL was finally able to announce a significant award to Cray for the next stage of Jaguar, growing the system into the ten to twenty petaFLOPS range with the addition of GPU accelerators from NVIDIA.

The new system will be called Titan.

We caught up with Jack Wells, Director of Science for the National Center for Computational Sciences, a U.S. Department of Energy (DOE) Office of Science user facility at ORNL, to talk about Titan.

The Exascale Report: How many individual users or organizations do you see accessing Titan in 2012 – 2013?

WELLS: I think that we would be able to maintain a population of projects similar to what we have now. Through the INCITE [Innovative and Novel Computational Impact on Theory and Experiment] program at our leadership computing facility at Oak Ridge, we support and collaborate with 32 projects in 2011, and the available resources are oversubscribed. We also support nine projects through the ASCR Leadership Computing Challenge (ALCC) program and a larger number of smaller projects through our Director’s Discretionary Access Program. I expect the demand and our ability to support that number of projects will be sustained.

TER: Do you have any sense of the number of individual users?

WELLS: We do track the number of individual users. Our current number on the Jaguar supercomputer is approximately 800, and we expect this to remain fairly constant. Our users work on grand challenges in science and engineering. They engage in simulations to understand the molecular basis of disease, the intricacies of climate change, and the chemistry of a car battery that can last for 500 miles. They may be working on a biofuel that is economically viable or a fusion reactor that may someday provide clean, abundant energy. They have one thing in common—they use computing to solve some of the planet’s biggest problems. These individual users are participants in projects that can have, say, a dozen users, so the number of awards through INCITE, ALCC, and Director’s Discretion is small enough to keep the time allocations large. In the 2011 calendar year, for example, the average INCITE allocation was 27 million processor hours. One project received 110 million hours.

TER: How will the user access to the systems and their ability to develop and test applications change from Jaguar to Titan?

WELLS: We are working with Cray, PGI, CAPS, Allinea, Vampir, and the scientific library teams to have optimized tools for the users. We are also working now to get a core set of projects ready for Titan. One of the main questions that arose two years ago when we proposed the hybrid architecture focused on the usability of the future computer: Would researchers be able to squeeze results out of a GPU-accelerated machine without too much programming pain? So we have focused on a set of six applications that are representative of our workload, and are working with the architects of the codes and some of the main users to get these codes ready—and it’s actually become part of the project. We have also developed a training curriculum, consisting of conferences, workshops, tutorials, case studies, and lessons learned, that covers tools and techniques for realizing the benefits of hybrid architecture.

TER: And could you clarify for us what those six applications are?

WELLS: One is S3D (Direct Numerical Simulation of Turbulent Combustion), a chemical combustion code out of Sandia used by Principal Investigator Jackie Chen to simulate burning fuels. Another is the Wang-Landau LSMS code (Wang-Landau Linear Scaling Multiple Scattering), a materials first-principles code that’s been developed here at Oak Ridge National Laboratory. Another code is LAAMPS (Los Alamos Molecular Dynamics code) authored by colleagues at Los Alamos and used here to simulate lignocellulose. Another is PFLOTRAN (Modeling Multiscale-Multiphase-Multicomponent Subsurface flows), a subsurface transport code that Peter Lichtner from Los Alamos uses to study carbon sequestration and underground transport of contaminants. Another is CAM-SE (a scalable, spectral element dynamical core for the Community Atmosphere Model), a community atmospheric code from the climate community. And the sixth is DENOVO, a neutron transport code. That’s a part of the workload within the Consortium for the Advanced Simulation of Light-Water Reactors—the DOE [Department of Energy] nuclear energy modeling and simulation hub led here at Oak Ridge.

TER: So Jack, when you say there is work being done now, what do the users – the application developers –the programmers – the scientists – what do they actually do now in order to get ready for Titan?

WELLS: When we started the work on these codes, there were few tools to help with the work. The teams have spent most of the time restructuring codes to expose more levels of parallelism and promote data locality. These are exactly the type of transformations that make codes run better on both accelerators and multicore CPUs. Some of the codes have kernels in CUDA, others are using directives with the compilers. Still others are using optimized libraries.

TER: Would you say there is a lot of manual work at this point?

WELLS: Things are improving in that regard as compiler directives are advanced. So many of the compiler companies are coming out with common compiler directives that help a great deal.

TER: So you have a very unique perspective on this – you have the experience on the user side and you have the experience on the leadership side – would you say that from the early days of being a user on very large, advanced computing systems – to today, are things easier for the user or are they more difficult

WELLS: If you take the 15- or 20-year view, I’m not sure. There are many new challenges, for example, the increasingly massive parallelism. But, I think the challenge of utilizing parallel computing in the early days was similar in character. If you think about message passing hardware before MPI, there was a lot of diversity. But then standards developed and our investments in software had a longer life. I think that’s what we’ll see here. Some people may tell you it’s a really big change—and it certainly is—but from my point of view, the fundamental issue of revealing new levels of parallelism reminds me of attempts to use the hierarchical memory and processor structure within the Intel Paragon supercomputers that we used in our laboratory during the 1990s.

Now the dramatic difference is the number of processing threads, and this has increased rather steadily. There was a time when 100-way parallelism was a big deal, and then 1,000 and 10,000, and now we have on the order of 100,000 processing cores, and they keep increasing. So, this is a big challenge, and what we see is that many of the applications that are doing well dealing with very large core counts—making progress using a large fraction of the full capability—many of them have taken on bigger, more realistic problems—problems that implement high degrees of fidelity and embrace more physical phenomena, stochastic behavior, ensemble behavior. These kinds of applications are the ones that are advancing science and engineering using the full capability of the machine.

TER: A number of people still question why we need to continue to push the technology envelope. They don’t get it – in terms of the importance. So Jack, what gets you the most excited when you think about how this processing capability may impact science and discovery? How do you see life changing when 20 petaFLOPS becomes the bottom of the production and performance scale.

WELLS: This is a very exciting question. Having such broad access to predictive simulation capability would dramatically advance many areas of science and engineering. I believe that we would dramatically accelerate the invention of new energy technologies, such as a 500-mile battery for transportation or very efficient solar cells, or the safe life extension of nuclear reactors. For scientists and engineers, this would revolutionize the practice of research. Simulation would not replace experiment’s role in the scientific method or in engineering design principles. But it would allow us to be very focused and efficient with the most interesting and important experiments to perform conceptual designs to construct prototypes.

TER: And in terms of an access convention, do you see cloud playing a role at all?

WELLS: Oh yes, I do. I think that is part of the story of computational science and engineering. There’s no doubt that this will be a cost-effective solution for some, maybe many, users. Scientists will take advantage of these resources—where it makes sense for them—and that is the way it should be.

TER: And on an international scale, do you see the U.S., because of efforts like Titan and what will be coming after that, maintaining some level of technology leadership?

WELLS: My understanding of U.S. science and engineering policy is that there’s a broad consensus around the role of the federal government in advancing supercomputing and then using supercomputing as a tool for advancing science, technology, U.S. competitiveness in general. I think there’s a strong bipartisan consensus there.

Of course, other countries also perceive the value of supercomputing, and they are investing as well. I think leadership should be defined in terms of impact—and that’s measured over an extended period of time. We’re committed to leadership in impact. Now certainly Europe and Asia are making significant investments in supercomputing. Some of the investments in Europe that stand out to me are their investments in application software. There are strong European research teams and computational science programs in Europe that are funding these integrated code teams to advance particular areas of engineering and science in which they feel they have leadership. And I think that’s significant.

TER: What steps are you taking at ORNL and the Leadership Computing Facility to ensure long term program success and to keep Oak Ridge and all your suppliers and partners working in harmony moving forward?

WELLS: We’ve touched on several points that are relevant to this question, but for long-term program success I’d emphasize the importance of a sustained policy on the role of supercomputing in science and engineering. And I think we have that. If that continues, it’s a strong foundation on which to build the future.

Relative to the current inflection point we have in technology, the energy consumption of these large machines necessitates energy-aware computing as we move forward. The broader industry is already doing this with investments in mobile computing and game hardware. The broader IT industry is making significant investments in these accelerator processors. So the technology risks of our platforms, going forward, are really quite modest. There’s always a risk of putting these machines together at scale, but that’s something we have a track record of managing through years of deploying leadership-class computing systems. And we have tremendous confidence in our vendor. Certainly the biggest perceived risk over the last two and one-half years as we’ve planned for Titan has been its usability by science and engineering teams. As I tried to emphasize previously, we are playing a role, in concert with our vendor partners, in making sure the machine is demonstrably useable. Computer science researchers will also have a role in generalizing or extracting the lessons that are learned throughout the Titan project and making them more readily available to a broader community.

This interview appears here courtesy of The Exascale Report.

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NASA Previews Data-Intensive Science at SC11

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At SC11, scientists and engineers from around the country will be on hand to present their NASA project results. In keeping with SC11’s focus on data-intensive science, Nasa will showcase demonstrations on Kepler Mission Findings, Space Weather Solutions, Predicting Rotorcraft Performance, and Space Launch System Design:

Our SC11 website features 44 demonstrations of projects across the agency’s mission areas, along with a collection of spectacular images and videos related to aviation safety and efficiency, exploration of the universe, design of next-generation space vehicles, and global climate research, and much more—all generated using the Agency’s supercomputing resources and technologies.

Visit NASA at SC11 Booth #615.

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IDC Report: Heterogeneous Supers Pave the Way to Exascale

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Nvidia’s Sumit Gupta writes that the road to Exascale will clearly be built on heterogeneous systems.

In a freshly published report, industry analyst firm IDC argues that the fastest path to this exaflop milestone is through heterogeneous designs. They state that x86 processors will not be enough to meet the performance and power goals that the U.S. Department of Energy (DOE) has outlined – 1,000 times faster than the current petaflop systems and 50-100 times more energy efficient. Given the daunting challenges of cost, power consumption, application performance and space, IDC concludes that heterogeneous systems offer the best solution to achieve exascale performance.

Read the Full Story or Download the IDC Report (PDF).


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Sponsored Post: Calling All Grid Engine Users – Complete the Survey to be Entered to Win an iPad!

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Univa is taking a survey of the motivation for Grid Engine’s use in technical computing. Non-company related results will be shared with those who participate.

For Grid Engine users specifically, the questionnaire should take about 5 minutes to complete. That’s about the same time as a cup of coffee, so for those who identify themselves properly we will send you a $5 e-Gift card for use at Starbucks, or you may select another option.

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RCE Podcast: Sage Weil on the Ceph Petascale Open Source File System

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In this RCE Podcast, hosts Brock Palen and Jeff Squyres interview Dreamhost’s Sage Weil, Chief Architect of the Ceph. Weil designed Ceph to be a distributed network storage and file system that provides excellent performance, reliability, and scalability.

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The Portland Group Guarantees 2x GPU Performance

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In the world of HPC, performance claims often come with a disclaimer something like, “You’re mileage may vary.” Not this time.

Roy Kim writes that The Portland Group (PGI) has launched the 2x in 4 Weeks. Guaranteed Program designed to help developers achieve up to 2x speedups in their applications on GPUs in a month or less of development time.

PGI has been working on what you might call a “magic” compiler, called the “PGI Accelerator.” Technically speaking, it’s an auto-parallelizing compiler. It enables programmers to realize immediate acceleration of their application code, without requiring them to modify or adapt the underlying code itself. The compiler only requires the programmer to provide simple hints (known as “directives”), about which portion of an application’s code needs to be parallelized. The compiler then does the heavy lifting — automatically parallelizing that portion of the code.

Simply sign up to get a trial copy of the PGI Accelerator compiler and try it out. We guarantee you will get 2x application speed-up in less than a month of development time. If you don’t, PGI will offer four hours of expert consultation to accelerate your code.

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Posted in GPUs, HPC, HPC Hardware, HPC Software | 2 Comments

Ask the Mellanox HPC Experts

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Now through SC11, Mellanox has made it’s technical experts available to answer your HPC questions via Twitter #AskMellanox or Facebook.

Experts on the line include: Michael Kagan – Chief Technology Officer, Dror Goldenberg – Vice President of Architecture, Yaron Haviv – Vice President of Data Center Solutions, and Diego Crupnicoff – Sr. Director of Architecture at Mellanox. You can also register for the company’s SC11 Dinner Event in Seattle on Wednesday, November 16th, at 6:30PM – 10:00pm.

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Where’s the Party At? Monday at SC11 it’s the Beowulf Bash!

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There’s one party you don’t want to miss at the Supercomputing conference–the Beowulf Bash at the Seattle Aquarium, starting at 9 pm on Nov. 14.

How can we top last year’s event? Simple, just sink to a new low and go straight to the bottom. This year we are heading to the Seattle Aquarium for some time down under! This unusually upscale Beowulf event follows the proud tradition of convincing our beloved sponsors to dole out their hard-earned money so that we can have yet another classic event for the entire HPC community.

The Seattle Aquarium is an ideal location to talk with the Beowulf community. As in past years, many of the pioneers attend to say hello and meet old friends. Besides, if you don’t want to talk about exascale, cloud, big data, compilers, or bytes and bits, you can always go drink beer with the sea creatures (they don’t talk as much and are good listeners). And don’t forget to visit the Cephalopods! The usual festive food and drink will be provided by the generous sponsors.

At insideHPC, we are proud sponsors of the Beowulf Bash, so we hope to see you there after the SC11 exhibits close on Monday night! Read the Full Story or send this PDF invitation to your HPC colleagues.

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SC11 Preview: NCSA Sessions and More

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NCSA has posted an SC11 preview page with video previews, session schedules, and more.

The National Center for Supercomputing Applications (NCSA) provides powerful computers and expert support that help thousands of scientists and engineers across the country better understand our world. The University of Illinois at Urbana-Champaign, where NCSA is based, is known for its excellence in computer science and electrical and computer engineering. It is home to the Institute for Advanced Computing Applications and Technologies, the Universal Parallel Computing Research Center, the Illinois Cloud Computing Testbed, the Parallel Computing Institute, and is a CUDA Center of Excellence.

Visit booth #723 on the SC11 exhibit floor to learn more about NCSA and Illinois.


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Webinar: Heterogeneous Data-Parallel Programming, Nov. 16

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Nvidia’s GPU Technology Conference is hosting a webinar on Heterogeneous Data-Parallel Programming on Wednesday, November 16, 2011 9:00 AM – 10:00 AM PST.

In this webinar, Satnam Singh, Professor of Reconfigurable Computing, School of Computer Science, University of Birmingham (UK), will demonstrate data-parallel programming with Microsoft’s Accelerator system. The system provides a language neutral library for expressing whole-array computations which can be dynamically compiled into code for execution on GPUs, as well as code running on multiple processor cores using SSE instructions. Professor Singh will introduce the Accelerator API and data-structures which are exposed as a domain specific library through the use of overloaded operations with specific examples in C++ and F#.

Register now.


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Supercomputer Simulations Pin Down Galaxy Collision Rates

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From the University of California, Santa Cruz comes this story about how a new analysis of images from the Hubble Space Telescope combined with supercomputer simulations of galaxy collisions has cleared up years of confusion about the rate at which smaller galaxies merge to form bigger ones.

In the new work, all the previous observations were reanalyzed using a key new ingredient: highly accurate computer simulations of galaxy collisions. These simulations, which include the effects of stellar evolution and dust, show the lengths of time over which close galaxy pairs and various types of galaxy disturbances are likely to be visible. Lotz’s team accounted for a broad range of merger possibilities, from a pair of galaxies with equal masses joining together to an interaction between a giant galaxy and a puny one. The team also analyzed the effects of different orbits for the galaxies, possible collision impacts, and how the galaxies were oriented to each other.

The paper on this work, entitled “The Major and Minor Galaxy Merger Rates at z < 1.5,” has been accepted for publication in the Astrophysical Journal. Read the Full Story.

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CATA Survey Seeks Input from Canadian HPC Users

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The good folks at the Canadian Advanced Technology Alliance (CATA) are conducting an in-country survey on high performance computing.

The objective of this study is to evaluate the commercial values of High Performance Computing (HPC aka Supercomputing) to Canadian industry. Most HPC experts agree that Canadian adoption of supercomputing lags other nations against which our economy competes, so we will also be studying the barriers to adoption. To be competitive on a global scale, Canadian enterprises need to supercharge their business and R&D processes with supercomputing. Initiatives are being launched in the US and other nations to encourage greater HPC adoption by small and medium sized enterprises, if similar initiatives are not developed for Canada, we’ll be left behind. This HPC study will create a foundation of solid data from which to design initiatives together with the study partners tailored to the needs of Canadian business.

Fellow Canucks “who can speak to the business value of computing” are asked to participate. Read the Full Story.

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SC11 Preview: Argonne National Labs

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SC11 is so big that many organizations post special previews of their participation at the conference. In this SC11 preview, Argonne National Labs is showcasing some interesting papers and sessions by staff members.

In addition to a variety of demos, posters, and on-hand experts, we’re pleased to provide an excellent speaker program. Argonne and invited speakers will present short talks on a wide range of topics from tools and techniques to scientific breakthroughs enabled by Argonne’s computational resources.

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A New ‘Home Base’ for HPC – ACM’s Newest Special Interest Group

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Today ACM launched a new Special Interest Group on High Performance Computing: SIGHPC, the first international group within a major professional society that is devoted exclusively to the needs of students, faculty, and practitioners in high performance computing. Their mission is simple: spread the use of high performance computing and help raise the standards of the profession and ensure a rich and rewarding career for people involved in the field.

Part of the excitement of high-performance computing as a career is that it is very multi-disciplinary in nature,” says Cherri Pancake, Professor at Oregon State University and the first Chair of SIGHPC. “HPC brings together computational techniques, algorithms, system software, computer architecture, parallel programming, and system administration. But finding your way among the choices and career paths can be challenging.”

The new group will host a booth in the Main Lobby at SC11. There prospective members can take advantage of a discounted introductory rate or join anytime at sighpc.org. Read the Full Story.

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Andy Bechtolsheim to Address Roadmap Conference Nov. 10 in San Francisco

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This week GigaOM announced that Andy Bechtolsheim will present at RoadMap. The conference that will look at how connectedness changes everything from how we live, work, create and consume. Other speakers at the conference include Drew Houston of Dropbox, Jack Dorsey of Twitter & Square, Michael Moritz of Sequoia Capital, Brian Chesky of AirBnB, Tom Conrad of Pandora, Jim Lanzone of CBS Interactive, Bob Bowman of MLB.com and Ed Leonard of Dreamworks Animation.

Everything that has a silicon beat – phones, eBook readers, game devices, cars, televisions to even heart rate monitors and scales – is being connected and in turn redefining the very idea of our economy. This state of constant connectedness is what makes it an exciting time. And as exciting as this time might be, today is a time of immense confusion. In order to make sense of many of the changes, I decided that it was time to host an event that gives us a roadmap to the future.

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