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Tuning Bioinformatics Codes with Allinea Performance Reports

Mark O'Connor (left) and Rich Brueckner (right)

In this video from ISC 2015, Mark O’Connor from Allinea demonstrates how the company’s Performance Reports tool enables coders to speed up the Discovar bioinformatics code. “Allinea Performance Reports are the most effective way to characterize and understand the performance of HPC application runs. One single-page HTML report elegantly answers a range of vital questions for any HPC installation.”

Video: HPC Trends in the Trenches from Bio-IT World

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In this video, Chris Dagdigian from Bioteam delivers his annual assessment of the best, the worthwhile, and the most overhyped information technologies for life sciences at the 2015 Bio-IT World Conference & Expo in Boston.

Video: A Bioinformatics Pipeline for Analyzing Patient Tumours

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In this video from WestGrid in Canada, Dr. Yussanne Ma from the Michael Smith Genome Sciences Centre describes how high performance computing supports her research group’s work, highlighting a recent project where a bioinformatics pipeline was built for the personalized onco-genomics project (POG) at the BC Cancer Agency.

Ghent University Speeds Genome Analysis with TimeLogic

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Using FPGA-based accelerators, TimeLogic’s DeCypher systems greatly increase the speed of sequence comparison.