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Genomics High Performance Computing Guide

There are times when a convergence of technologies happens that can benefit a very large number of humans in order to improve their well-being. A number of technological innovations are coming together that can greatly enhance the recovery from life-threatening illnesses and prolong and improve the quality of life. With a combination of faster and more accurate genomics sequencing, faster computer systems and new algorithms, the movement of discovering what medicine will work best on individual patients has moved from research institutions to bedside doctors. Physicians and other healthcare providers now have better, faster, and more accurate tools and data to determine optimal treatment plans based on more patient data. This is especially true for pediatric cancer patients. These fast-moving technologies have become the center of a national effort to help millions of people overcome certain diseases.

NSF Centers for Innovation Focus on Machine Learning, Genomics and More

The University of Illinois at Urbana-Champaign is leading three new centers of innovation funded through the National Science Foundation’s Industry/University Cooperative Research Centers (I/UCRC) program.

Video: Profiling Genome Pipeline I/O with DDN and the Sanger Institute

“The data that I presented from the Sanger Institute is typical of the profiles that we come across: a mix of good streaming IO (ie the larger reads), but unexpectedly high numbers of small reads and writes. These small reads and writes are potentially harmful to the file system. We’ve profiled HPC applications in various different life sciences organizations, not just the Sanger Institute, and we’ve found these IO patterns throughout. We’ve also seen similar IO patterns in EDA and oil and gas applications.”

IBM POWER8 System to Advance Genomic Health Research at University of Calgary

Today IBM and the University of Calgary announced a five-year collaboration to accelerate and expand genomic research into common childhood conditions such as autism, congenital diseases and the many unknown causes of illness. As part of the collaboration, IBM will augment the existing research capacity at the Cumming School of Medicine’s Alberta Children’s Hospital Research Institute by installing a POWER8-based computing and storage infrastructure along with advanced analytics and cognitive computing software.

Consolidating Storage for Scientific Computing

In this special guest feature from Scientific Computing World, Shailesh M Shenoy from the Albert Einstein College of Medicine in New York discusses the challenges faced by large medical research organizations in the face of ever-growing volumes of data. “In short, our challenge was that we needed the ability to collaborate within the institution and with colleagues at other institutes – we needed to maintain that fluid conversation that involves data, not just the hypotheses and methods.”

DDN Announces Winners of the 2015 Pioneer Awards

Today DDN announced the winners of the 2015 Pioneer User Awards. The awards recognize and celebrate visionary individuals, organizations and/or multiple people who are embracing leading-edge high performance computing technologies to shatter long-standing technical limits and to accelerate business results and scientific insights.

Video: End to End Infrastructure Design for Large Scale Genomics

In this video from the DDN User Group at SC15, Kevin Behn from the HudsonAlpha Institute for Biotechnology presents: End to End Infrastructure Design for Large Scale Genomics. “HudsonAlpha has generated major discoveries that impact disease diagnosis and treatment, created intellectual property, fostered biotechnology companies and expanded the number of biosciences-literate people, many of whom will take their place among the future life sciences workforce. Additionally, HudsonAlpha has created one of the world’s first end-to-end genomic medicine programs to diagnose rare disease. Genomic research, educational outreach, clinical genomics and economic development: each of these mission areas advances the quality of life.”

Genomics and HPC

Genome sequencing is a technology that can takes advantage of the growing capability of todays ‘ modern HPC systems. Dell is leading the charge in the area of personalized medicine by providing highly tuned systems to perform genomic sequencing and data management. The whitepaper, The InsideHPC Guide to Genomic is a overview of how Dell is providing state-of-the-art solutions to the life science industry.

Job of the Week: HPC Modeling and Optimization Postdoc at LANL

Los Alamos National Lab is seeking an HPC Modeling and Optimization Postdoc in our Job of the Week.

DDN Storage Speeds Genome Sequencing at University of Miami

Today DDN announced that the University of Miami’s Center for Computational Science (CCS) has deployed high-performance, DDN GS12K scale-out file storage to speed scientific discoveries and boost collaboration with researchers around the world. CCS maintains one of the largest centralized academic cyberinfrastructures in the country, which fuels vital and critical discoveries in Alzheimer’s, Parkinson’s, gastrointestinal cancer, paralysis and climate modeling as well as marine and atmospheric science research.