“The data that I presented from the Sanger Institute is typical of the profiles that we come across: a mix of good streaming IO (ie the larger reads), but unexpectedly high numbers of small reads and writes. These small reads and writes are potentially harmful to the file system. We’ve profiled HPC applications in various different life sciences organizations, not just the Sanger Institute, and we’ve found these IO patterns throughout. We’ve also seen similar IO patterns in EDA and oil and gas applications.”
Today IBM and the University of Calgary announced a five-year collaboration to accelerate and expand genomic research into common childhood conditions such as autism, congenital diseases and the many unknown causes of illness. As part of the collaboration, IBM will augment the existing research capacity at the Cumming School of Medicine’s Alberta Children’s Hospital Research Institute by installing a POWER8-based computing and storage infrastructure along with advanced analytics and cognitive computing software.
In this special guest feature from Scientific Computing World, Shailesh M Shenoy from the Albert Einstein College of Medicine in New York discusses the challenges faced by large medical research organizations in the face of ever-growing volumes of data. “In short, our challenge was that we needed the ability to collaborate within the institution and with colleagues at other institutes – we needed to maintain that fluid conversation that involves data, not just the hypotheses and methods.”
Today DDN announced the winners of the 2015 Pioneer User Awards. The awards recognize and celebrate visionary individuals, organizations and/or multiple people who are embracing leading-edge high performance computing technologies to shatter long-standing technical limits and to accelerate business results and scientific insights.
In this video from the DDN User Group at SC15, Kevin Behn from the HudsonAlpha Institute for Biotechnology presents: End to End Infrastructure Design for Large Scale Genomics. “HudsonAlpha has generated major discoveries that impact disease diagnosis and treatment, created intellectual property, fostered biotechnology companies and expanded the number of biosciences-literate people, many of whom will take their place among the future life sciences workforce. Additionally, HudsonAlpha has created one of the world’s first end-to-end genomic medicine programs to diagnose rare disease. Genomic research, educational outreach, clinical genomics and economic development: each of these mission areas advances the quality of life.”
Genome sequencing is a technology that can takes advantage of the growing capability of todays ‘ modern HPC systems. Dell is leading the charge in the area of personalized medicine by providing highly tuned systems to perform genomic sequencing and data management. The whitepaper, The InsideHPC Guide to Genomic is a overview of how Dell is providing state-of-the-art solutions to the life science industry.
Los Alamos National Lab is seeking an HPC Modeling and Optimization Postdoc in our Job of the Week.
Today DDN announced that the University of Miami’s Center for Computational Science (CCS) has deployed high-performance, DDN GS12K scale-out file storage to speed scientific discoveries and boost collaboration with researchers around the world. CCS maintains one of the largest centralized academic cyberinfrastructures in the country, which fuels vital and critical discoveries in Alzheimer’s, Parkinson’s, gastrointestinal cancer, paralysis and climate modeling as well as marine and atmospheric science research.
Today SGI announced that Inova Translational Medicine Institute (ITMI) has selected the company’s supercomputing solutions to enable researchers to obtain insights from its premier genomic databases. With the ability to diagnose patients with more accuracy and speed, ITMI will enable a higher level of treatment and care for the diverse population it serves.
Dell has teamed with Intel to create innovative solutions that can accelerate the research, diagnosis and treatment of diseases through personalized medicine. The combination of leading-edge CPUs from Intel and the systems and storage expertise from Dell create a state-of-the-art solution that is easy to install, manage and expand as required.