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Manage Reproducibility of Computational Workflows with Docker Containers and Nextflow

“Research computational workflows consist of several pieces of third party software and, because of their experimental nature, frequent changes and updates are commonly necessary thus raising serious deployment and reproducibility issues. Docker containers are emerging as a possible solution for many of these problems, as they allow the packaging of pipelines in an isolated and self-contained manner. This presentation will introduce our experience deploying genomic pipelines with Docker containers at the Center for Genomic Regulation (CRG). I will discuss how we implemented it, the main issues we faced, the pros and cons of using Docker in an HPC environment including a benchmark of the impact of containers technology on the performance of the executed applications.”

Video: HPC and Hyperscale Trends for 2016

Addison Snell from Intersect360 Research presented this talk at the Switzerland HPC Conference. “Based on updated research studies, Addison Snell of Intersect360 Research will present on forward-looking topics for HPC and Hyperscale markets. With an expanding look at hyper- scale, Intersect360 Research will describe the size and influence of the market, including evolving standards like Open Compute Project, OpenStack, and Beiji/Scorpio. Intersect360 Research has also investigated users’ plans for evaluating competing processing and interconnect options, including Xeon, Xeon Phi, GPU, FPGA, POWER, ARM, InfiniBand, and OmniPath.”

Video: Seagate Exascale HPC Storage

“Traditionally, storage have been using brute force rather than intelligent design to deliver the required throughputs but the current trend is to design balanced systems with full utilization of the back-end storage and other related components. These new systems need to use fine grained power control all the way down to individual disk drives as well as tools for continuous monitoring and management of these systems. In addition, the storage solutions of tomorrow needs to support multiple tiers including backend archiving systems supported by HSM as well multiple file systems if required. This presentation is intended to provide a short update of where Seagate HPC storage is today.”

Video: OpenPOWER Roadmap Toward CORAL

“Last year IBM together with partners out of the OpenPOWER foundation won two of the multi-year contacts of the US CORAL program. Within these contracts IBM develops an accelerated HPC infrastructure and software development ecosystem that will be a major step towards Exascale Computing. We believe that the CORAL roadmap will enable a massive pull for transformation of HPC codes for accelerated systems. The talk will discuss the IBM HPC strategy, explain the OpenPOWER foundation and the show IBM OpenPOWER roadmap for CORAL and beyond.”

Video: Huawei Powers Efficient and Scalable HPC

“Huawei focuses on R&D of IT infrastructure, cooling solutions, software integration, and provides end-to-end HPC solution by building ecosystems with partners. Huawei help customers from different sectors and fields, solving challenges and problems with computing resources, energy expenditure and business needs. This presentation will introduce how Huawei brings fresh technologies to next-generation HPC solutions for more innovation, higher efficiency and scale, as well as presenting our best practices for HPC.”

Tutorial on the EasyBuild Framework

Kenneth Hoste from the University Ghent presented this tutorial at the Switzerland HPC Conference. “One unnecessarily time-consuming task for HPC user support teams is installing software for users. Due to the advanced nature of a supercomputing system (think: multiple multi-core modern microprocessors (possibly next to co-processors like GPUs), the availability of a high performance network interconnect, bleeding edge compilers & libraries, etc.), compiling the software from source on the actual operating system and system architecture that it is going to be used on is typically highly preferred over using readily available binary packages that were built in a generic way.

Panel Discussion on Exascale Computing

In this video from the 2016 HPC Advisory Council Switzerland Conference, Addison Snell from Intersect360 Research moderates a panel discussion on Exascale computing. “Exascale computing will uniquely provide knowledge leading to transformative advances for our economy, security and society in general. A failure to proceed with appropriate speed risks losing competitiveness in information technology, in our industrial base writ large, and in leading-edge science.”

Bo Ewald Presents: The Quantum Effect – HPC Without FLOPS

Bo Ewald from D-Wave Systems presented this talk at the HPC Advisory Council Switzerland Conference. “This talk will provide an introduction to quantum computing and briefly review different approached to implementing a quantum computer. D-Wave’s approach to implementing a quantum annealing architecture and the software and programming environment will be discussed. Finally, some potential applications of quantum computing will also be addressed.”

Using Xeon + FPGA for Accelerating HPC Workloads

“The Exascale computing challenge is the current Holy Grail for high performance computing. It envisages building HPC systems capable of 10^18 floating point operations under a power input in the range of 20-40 MW. To achieve this feat, several barriers need to be overcome. These barriers or “walls” are not completely independent of each other, but present a lens through which HPC system design can be viewed as a whole, and its composing sub-systems optimized to overcome the persistent bottlenecks.”

Video: Protecting Your Data, Protecting Your Hardware

“Thanks to the arrival of SSDs, the performance of storage systems can be boosted by orders of magnitude. While a considerable amount of software engineering has been invested in the past to circumvent the limitations of rotating media, there is a misbelief than a lightweight software approach may be sufficient for taking advantage of solid state media. Taking the data protection as an example, this talk will present some of the limitations of current storage software stacks. We will then discuss how this unfold to a more radical re-design of the software architecture and ultimately is making a case for an I/O interception layer.”