Better Healthcare with High performance Parallelized Genomics Analysis

Over at Scalability.org, Joe Landman writes that we are on the cusp of a healthcare revolution that will be sparked by high performance parallelized genomics analysis. Much of the awesomeness is in the algorithm, a massively parallel system that is described in depth here: “Churchill: an ultra-fast, deterministic, highly scalable and balanced parallelization strategy for the discovery of human genetic variation in clinical and population-scale genomics.”

Video: Scalable Informatics Steps Up IO at SC14

“By working with ThinkParQ, we have been able to leverage one of the best and highest performance storage systems for scale-out deployment,” said Dr. Joseph Landman, CEO of Scalable Informatics. “When testing a write-dominated workload using fio, IOR, and io-bm,a single rack of FastPath Unison with BeeGFS running on spinning disks sustained in excess of 40GB/s for multi-terabyte sized writes,far outside of cache. This level of performance comes from the combination of FastPath Unison hardware design, the Scalable Informatics Operating System (SIOS), and the excellent BeeGFS filesystem.”