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Lifebit Launches Federated Genomics Cloud Operating System for Accelerated Discovery

Lifebit CloudOS solves the major barrier faced by the genomics sector: data is often siloed and distributed, inaccessible for multiple parties to analyze. Without the ability to perform analyses across this distributed data the industry is stalled, impeding critical progress in precision medicine and life sciences. “Because it is completely agnostic to the customer’s HPC and cloud infrastructure, workflows and data, Lifebit CloudOS is unlike any other genomics platforms in that it sits natively on one’s cloud/HPC and brings computation to the data instead of the other way around.”

Lenovo and Intel Power Data-Intensive Science at the Flatiron Institute

Today Lenovo and Intel revealed how their collaboration on joint technology solutions that accelerate the convergence of HPC and AI are helping scientists at the Flatiron Institute solve scientific challenges in entirely new ways. “Seeing some of the greatest minds rely upon our technology to discover answers for some of humanity’s most pressing questions is rewarding. But pushing the boundaries of HPC and AI capabilities even further so more people can benefit is what drives us.”

CRAG Adopts Pure Storage for Agricultural Genomics

The Centre for Research in Agricultural Genomics (CRAG) in Spain has announced plans to deploy Pure Storage solutions to improve its high performance computing environment. CRAG is dedicated to cutting-edge scientific research in plant and farm animal biology. The new solution ensures the speed, scalability and stability required by CRAG’s scientists to carry out vital research projects.

Atos Powers HPC for Genomic Pilot Platform

Atos was recently selected by GCS AURAGEN to provide and orchestrate the high-performance computing infrastructure and storage of a new genomic pilot platform for high-flow sequencing calculation. “The Atos solution is designed to support the entire life cycle of genomic data – from DNA sequencing to analysis production.”

Big Compute Podcast: HPC and Genomics to Revolutionize Medicine

In this Big Compute Podcast episode, Gabriel Broner hosts Mark Borodkin, COO of Bionano Genomics, to discuss how genomics and HPC enable doctors and researchers to diagnose complex diseases and prescribe unique personalized treatments based on individual variations of the DNA. “We decided to abstract HPC in the cloud through Rescale and our software. All our customers need to know is that the solution offers the security and performance they need, and they don’t need to learn the new jargon of cloud.”

Podcast: Seeing the Black Hole with Big Data

In this podcast, the Radio Free HPC team discusses how the news of the cool visualization of an actual black hole leads to interesting issues in HPC land. “The real point: the daunting 1.75 PB of raw data from each telescope meant a lot of physical drives that had to be flown to the data center. Henry leads a discussion about the race between bandwidth and data size.”

Video: LANL Creates first Billion-atom Biomolecular Simulation

Researchers at Los Alamos National Laboratory have created the largest simulation to date of an entire gene of DNA, a feat that required one billion atoms to model and will help researchers to better understand and develop cures for diseases like cancer. “It is important to understand DNA at this level of detail because we want to understand precisely how genes turn on and off,” said Karissa Sanbonmatsu, a structural biologist at Los Alamos. “Knowing how this happens could unlock the secrets to how many diseases occur.”

Spectra Logic and Arcitecta team up for Genomics Data Management

Spectra Logic is teaming with Arcitecta for tackling the massive datasets used in life sciences. The two companies will showcase their joint solutions at the BioIT World conference this week in Boston. “Addressing the needs of the life sciences market with reliable data storage lies at the heart of the Spectra and Arcitecta relationship,” said Spectra CTO Matt Starr. “This joint solution enables customers to better manage their data and metadata by optimizing multiple storage targets, retrieving data efficiently and tracking content and resources.”

Custom Atos Supercomputer to Speed Genome Analysis at CNAG-CRG in Barcelona

Atos will soon deploy a Bull supercomputer at the Centro Nacional de Análisis Genómico (CNAG-CRG) in Barcelona for large-scale DNA sequencing and analysis. To support the vast process and calculation demands needed for this analysis, CNAG-CRG worked with Atos to build this custom-made analytics platform, which helps drive new insights ten times faster than its previous HPC system. “Atos helped us to set up a robust platform to conduct in-depth high-performance data analytics on genome sequences, which is the perfect complement to our outstanding sequencing platform”, stated Ivo Gut, CNAG-CRG Director.

Parabricks and SkyScale Raise the Performance Bar for Genomic Analysis

“In the modern world of genomics where analysis of 10’s of thousands of genomes is required for research, the cost per genome and the number of genomes per time are critical parameters. Parabricks adaption of the GATK4 Best Practice workflows running seamlessly on SkyScale’s Accelerated Cloud provides unparalleled price and throughput efficiency to help unlock the power of the human genome.”