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Call for Submissions: IO500 List

The Virtual Institute for IO is now accepting submissions for the upcoming IO500 list, which will be revealed at ISC 2018 in Frankfurt, Germany. “The IO500 benchmark suite is designed to be easy to run and the community has multiple active support channels to help with any questions. Please submit and we look forward to seeing many of you at ISC 2018! Please note that submissions of all size are welcome; the site has customizable sorting so it is possible to submit on a small system and still get a very good per-client score for example. Additionally, the list is about much more than just the raw rank; all submissions help the community by collecting and publishing a wider corpus of data.”

Call for Applications: NCSA GPU Hackathon in September

NCSA is now accepting team applications for the Blue Waters GPU Hackathon. This event will take place September 10-14, 2018 in Illinois. “General-purpose Graphics Processing Units (GPGPUs) potentially offer exceptionally high memory bandwidth and performance for a wide range of applications. A challenge in utilizing such accelerators has been learning how to program them. These hackathons are intended to help overcome this challenge for new GPU programmers and also to help existing GPU programmers to further optimize their applications – a great opportunity for graduate students and postdocs. Any and all GPU programming paradigms are welcome.”

Radio Free HPC Reviews the Results from the ASC 2018 Student Cluster Competition

In this podcast, the Radio Free HPC team reviews the results of the ASC 2018 Student Cluster Competition.

“The ASC 2018 Student Supercomputer Challenge finalist were announced on March 20, 2018. The 20 finalists will design and build supercomputers up to 3,000 Watts, solve exceptionally difficult problems in AI reading comprehension, perform RELION optimization as a core application of the Nobel winning cryo-electron microscopy, and utilize CFL3D, HPL, and HPCG.”

The Galactos Project: Using HPC To Run One of Cosmology’s Hardest Challenges

Debbie Bard from NERSC gave this talk at the HPC User Forum. “We present Galactos, a high performance implementation of a novel, O(N^2 ) algorithm that uses a load-balanced k-d tree and spherical harmonic expansions to compute the anisotropic 3PCF. Our implementation is optimized for the Intel Xeon Phi architecture, exploiting SIMD parallelism, instruction and thread concurrency, and signicant L1 and L2 cache reuse, reaching 39% of peak performance on a single node. Galactos scales to the full Cori system, achieving 9.8 PF (peak) and 5.06 PF (sustained) across 9636 nodes, making the 3PCF easily computable for all galaxies in the observable universe.”

Job of the Week: Application Programmer at UC San Diego

The University of California at San Diego is seeking an Applications Programmer in our Job of the Week. “The Applications Programmer will assist the Neurosciences IT Manager and business office IT team. Provides technical support and assists with the design, implementation and maintenance of all Neurosciences websites and applications, utilizing Windows Operating System, MacOS and web-connected relational database applications (DB2, MS-SQL, MySQL, and Access).”

Video: Doug Kothe Looks Ahead at The Exascale Computing Project

In this video, Doug Kothe from ORNl provides an update on the Exascale Computing Project. “With respect to progress, marrying high-risk exploratory and high-return R&D with formal project management is a formidable challenge. In January, through what is called DOE’s Independent Project Review, or IPR, process, we learned that we can indeed meet that challenge in a way that allows us to drive hard with a sense of urgency and still deliver on the essential products and solutions. In short, we passed the review with flying colors—and what’s especially encouraging is that the feedback we received tells us what we can do to improve.”

Podcast: Supercomputing the Emergence of Material Behavior

In this TACC Podcast, Chemists at the University of California, San Diego describe how they used supercomputing to design a sheet of proteins that toggle between different states of porosity and density. This is a first in biomolecular design that combined experimental studies with computation done on supercomputers. “To meet these and other computational challenges, Paesani has been awarded supercomputer allocations through XSEDE, the Extreme Science and Engineering Discovery Environment, funded by the National Science Foundation.”

Satoshi Matsuoka to receive High Performance Parallel Distributed Computation Achievement Award

Today ACM announced that that Dr. Satoshi Matsuoka will receive the annual HPDC Achievement Award for his pioneering research in the design, implementation, and application of high performance systems and software tools for parallel and distributed systems. “ACM HPDC is one of the top international conferences in the field of Computer Science / High Performance Calculation, and among them, I am delighted to have won the Society Career Award for the first time as a Japanese.”

Quantum Storage Solutions Power Self-driving Cars for AutonomouStuff

Today Quantum Corporation named AutonomouStuff LLC as its primary partner for storage distribution in the automotive market, enabling them to deliver Quantum’s comprehensive end-to-end storage solutions for both in-vehicle and data center environments. “Autonomous research generates an enormous volume of data which is vital to achieving the goal of a safe autonomous vehicle,” said Bobby Hambrick, founder and CEO of AutonomouStuff. “Quantum multitier data storage kits powered by StorNext offer a highly scalable and economical solution to the data dilemma researchers face.”

ReFrame: A Regression Testing Framework Enabling Continuous Integration of Large HPC Systems

“Scientifico ReFrame is a new framework for writing regression tests for HPC systems. The goal of the framework is to abstract away the complexity of the interactions with the system, separating the logic of a regression test from the low-level details, which pertain to the system configuration and setup. This allows users to write easily portable regression tests, focusing only on the functionality. The purpose of the tutorial will be to do a live demo of ReFrame and a hands-on session demonstrating how to configure it and how to use it.”