In this video from the 2013 HPC User Forum, Earl Joseph presents the IDC HPC Market Update.
Download the slides (PDF) or check out the HPC User Forum Video Gallery.
Video: IDC HPC Market Update
Enriching Future Food Supplies with TACC Supercomputing Know-how
The 1000 bull genomes project aims to provide a large database of genetic variants for genomic prediction and genome wide association studies in all cattle breeds for the bovine research community.
Harnessing information from DNA sequences in buffalo and cattle is an important step in meeting the growing world’s demand for food. As the world’s population approaches nine billion people in 2050, the demand for food will double. Researchers are hoping new DNA variants will be identified for use in breeding programs to increase milk and meat production. Advances in DNA sequencing technologies are generating a stampede of sequence data for both the water buffalo and bovine research communities.
With help from computational experts at TACC, the researchers were able to sequence data that previously required three weeks of computing time in only 8 to 10 hours. Read the Full Story.
Video: Space Oddity from the International Space Station
Our Video Sunday feature continues with this rendition of David Bowie’s Space Oddity with vocals from Commander Chris Hadfield on board the international space station.
Hadfield’s son Evan writes: “He returns home in Soyuz in the early morning of the 14th, and this is his final video from Station. It is also, coincidentally, the first real music video ever recorded in space.”
Update: This video will soon surpass 7 million views You have to see this on an HD display. Incredible!
Video: Balanced Design for HPC I/O Capability
In this video from the Lustre User Group 2013, Andrew Uselton from NERSC presents: Balanced Design fro HPC I/O Capability.
Download the slides (PDF) or check out more Lustre presentations in our LUG 2013 Video Gallery.
Job of the Week: Pre-Sales Engineer (SE) at Allinea in California
Allinea is seeking a Pre-Sales Engineer (SE) in our Job of the Week.
Allinea supports the customer base through a combination of direct sales and partnerships with the leading system vendors. The SE will be the main technical point of contact for customers throughout the sales process and in post-sales activities such as training. The SEs sales support activities include conducting remote web-based and on-site demonstrations, liaising during product trials and supporting the evaluations process and building relationships with client technical staff. The ability to communicate and work closely with Allinea partners, remote sales teams, product development groups and to manage priorities will also be crucial.
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As a reminder, we are offering FREE job listings for .EDU and .GOV domains, so email us at: info @ insideHPC.com for a special discount code.
Performance & Functionality Testbed for Clustered Filesystems at Bank of Italy
In this video from the Lustre User Group 2013, Giuseppe Bruno from the Bank of Italy presents: Performance & Functionality Testbed for Clustered Filesystems.
Download the slides (PDF) or check out more Lustre presentations in our LUG 2013 Video Gallery.
A Look at Five HPC Buzzwords
Over at the Adaptive Computing Blog, Ian Nate writes that five HPC buzwords are dominating the conversation as of late.
We’ve noticed a rise in the use of Energy-Efficient Computing, especially when it comes to HPC and Datacenter. A key factor in the future of large-scale HPC systems, energy efficiency is emerging as likely a second big obstacle to reaching exascale. The reason is the cost of powering an exascale system is exponentially higher than the current petascale systems, and power isn’t getting any cheaper. As an industry, HPC will have to weigh the benefits, or need, for exascale, versus the cost to house and power such systems. The good news is that many systems in Europe are already thinking green because of the higher energy costs. And, we’re seeing a stronger presence for Green Computing in the United States, with systems like NICS’ Beacon reaching the top of the Green500, a list that has picked up significant steam since its initial release in 2007.
The other buzzwords include Big Data, Exascale, Petascale Race, and HPC Cloud. Read the Full Story.
Video: Managing and Monitoring a Scalable Lustre Infrastructure
In this video from the Lustre User Group 2013, Makia Minich from Xyratex presents: Managing and Monitoring a Scalable Lustre Infrastructure. Download the slides (PDF) or check out our LUG 2013 Video Gallery.
During his talk, Makia mentions an excellent presentation from John West entitled What’s Missing from HPC.
Bo Ewald Ready to Ride Quantum Computing at D-Wave
D-Wave Systems, a commercial quantum computing company, has announced the formal launch of its US business.
Industry expert and supercomputing veteran, Robert “Bo” Ewald will lead the new business as president and will head up global customer operations as the company’s chief revenue officer. New offices and R&D facilities have opened in Palo Alto, California and others are expected in the near future.
Bo Ewald joining us is huge validation of our business,’ said Vern Brownell, CEO of D-Wave Systems. “Bo is a legendary figure in the supercomputing industry. His knowledge and influence reach a wide array of sectors, where he has delivered state-of-the-art high performance solutions for research, defence and intelligence, energy, manufacturing, financial services and genomics. Throughout Bo’s career he has been dedicated to helping organisations solve their most difficult challenges, which perfectly matches the mission of D-Wave. Today we launch our formal presence in the US and will start to expand our business globally. It is gratifying to have Bo at the helm.
Ewald added: “I’ve been in pioneering technology organisations for a long time with companies that did things that had never been done before and that allowed their customers to do the same. The quantum computers being developed by D-Wave and the applications that will be used by our customers will be an even more revolutionary step than I’ve seen in the industry. People will be able to solve problems that they can only dream about today, on systems that are turning science fiction into science fact.”
This story appears here as part of a cross-publishing agreement with Scientific Computing World.
Jeff Layton on Tools for Data Migration
Over at HPC Admin, Dell’s Jeff Layton writes that with today’s explosive data growth, at some point you will have to migrate data from one set of storage devices to another. To help move things along, he provides an overview of data migration tools.
At some point during this growth spurt, you will have to think about migrating your data from an old storage solution to a new one, but copying the data over isn’t as easy as it sounds. You would like to preserve the attributes of the data during the migration, including xattrs (extended attributes), and losing information such as file ownership or timestamps can cause havoc with projects. Plus, you have to pay attention to the same things for directories; they are just as important as the file themselves (remember that everything is a file in Linux). In this article, I wanted to present some possible tools for helping with data migration, and I covered just a few of them. However, I also wanted to take a few paragraphs to emphasize that you need to plan your data migration if you want to succeed.
As referred to in Layton’s article, this video from the Lustre User Group 2013 features Marc Stearman from LLNL presenting: Sequoia Data Migration Experiences. Download the slides (PDF).
Read the Full Story.
Special ISC’13 Session to Probe the Thinking behind Europe’s Human Brain Project
In a special session at ISC’13, scientists working on the Human Brain Project will discuss their vision and roadmap for computing. Featuring Dr. Henry Markram of EPFL, the June 18 keynote will be entitled Supercomputing & the Human Brain Project – Following Brain Research & ICT on their 10-Year Quest.
The Human Brain Project, recently awarded a 10 year grant by the EU Commission, will pull together all our existing knowledge about the human brain and to reconstruct the brain, piece by piece, in supercomputer-based models and simulations. Federating more than 80 European and international research institutions, the Human Brain Project is estimated to cost 1.19 billion euros. It will be coordinated at the Ecole Polytechnique Fédérale de Lausanne (EPFL) in Switzerland, by neuroscientist Henry Markram with co-directors Karlheinz Meier of Heidelberg University, Germany, and Richard Frackowiak of Centre Hospitalier Universitaire Vaudois and the University of Lausanne. The project will also associate some important North American and Japanese partners.
Read the Full Story.
The ISC’13 conference takes place June 16-20 in Leipzig, Germany and discounted Early Registration ends May 15.
Winston Saunders on Exascalar and Cost-effective HPC
Over the Intel Datastack Blog, Winston Saunders writes considering the rapidly expanding efficiency and performance capability of supercomputing systems, it may be time to upgrade just for the electricity savings alone.
You can see system-level annualized energy costs in the Figure. From this point it is pretty straight forward to calculate a payback time for replacing inefficient servers. It’s interesting they work out to be vertical lines. It’s interesting that they times for return on investment show up as vertical lines. It’s astounding that they are so short. In several cases, less than a year!
Read the Full Story.
Video: Aeon Computing Showcases Intelligent Disk Arrays with Lustre and ZFS
In this video from the Lustre User Group 2013, Doug Johnson from Aeon Computing describes the company’s Hydra storage arrays that marry the speed of Lustre with the HA capabilities of ZFS.
The Hydra60 is a combination Lustre OSS (object storage server) and OST (object storage target) with two active/active failover nodes and shared storage in a single system chassis with an ultra dense 60 drive 6Gb SAS storage infrastructure. With a unified and zonable 6Gb SAS dual-ported backplane and drives the Hydra60 can sustain a remarkable performance while providing high-availability to volumes or object storage. With external interface options including FDR Infiniband, 40/10GbE 1Gb Ethernet and supporting Linux and Lustre releases 2.x the Hydra60 makes an excellent storage platform for Lustre performance with HA operation. The design of Hydra60 provides an affordable, redundant and resilient storage platform by leveraging RAIDZ thereby eliminating the cost of hardware RAID controller technology.”
For more on Lustre, check out our LUG 2013 Video Gallery.
Japan to Enter the Race to Exascale
Japan News reports that the country’s science ministry is considering development of an exascale supercomputer that would be 100 times faster than K computer, which is currently the nation’s fastest machine. With a goal of completing the machine by about 2020, the Education, Culture, Sports, Science and Technology Ministry is preparing to request funding for conceptual designs and other areas in next fiscal year’s budget, the sources said.
Exascale computer projects are already under way in the United States, Europe and China, all aiming for completion around 2020. The working group decided to enter the fierce international race to develop an exascale supercomputer because “it would aid scientific and technological development, and help improve industrial competitiveness,” the sources said.
Read the Full Story.
ScaleMP Goes After Big Memory SGI Customers
Today ScaleMP announced that, together with its technology and channel partners, it will offer a competitive solution for any customer holding a SGI shared-memory UV quote. According to the company, their competitive solutions will provide 20 percent more memory, 20 percent greater performance at 20 percent lower price than an eligible SGI quote.
This limited-time offer provides customers with a single source for solutions based on vSMP Foundation software and the latest x86 hardware. With support for up to 256 TB of RAM and 32,768 CPUs, ScaleMP solutions power extreme shared-memory systems. ScaleMP solutions support scalable system backplane with over 500 Gbps (bidirectional) and allows for active-backplane redundancy, preventing interconnect failure from hurting system stability.
ScaleMP is very excited to be teaming with our technology partners to provide the industry with more affordable and better performing shared-memory systems. With the growing demand for shared-memory and large-memory applications, we are looking to increase the penetration of software-defined systems into the broader IT ecosystem,” said Shai Fultheim, CEO and founder of ScaleMP.
Solutions based on vSMP Foundation allow choice of hardware platform and are available based on the most recent Intel and AMD processors. vSMP Foundation will also support Intel’s upcoming Ivy Bridge processors at launch time.
Read the Full Story.
