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Job of the Week: HPC System Administrator at D.E. Shaw Research

D.E. Shaw Research is seeking and HPC System Administrator in our Job of the Week. “Exceptional sysadmins sought to manage systems, storage, and network infrastructure for a New York–based interdisciplinary research group. Ideal candidates should have strong fundamental knowledge of Linux concepts such as file systems, networking, and processes in addition to practical experience administering Linux systems. Relevant areas of expertise might include large-installation systems administration experience and strong programming and scripting ability, but specific knowledge of and level of experience in any of these areas is less critical than exceptional intellectual ability.”

ISC 2019 Keynote to focus on Algorithms of Life

Today the ISC 2019 conference announced that their keynote will be delivered by Professor Ivo Sbalzarini, who will speak to an audience of 3500 attendees about the pivotal role high performance computing plays in the field of systems biology. Under the title, The Algorithms of Life – Scientific Computing for Systems Biology, Sbalzarini will discuss how HPC is being used as a tool for scientific investigation and for hypothesis testing, as well as a more fundamental way to think about problems in systems biology.

Job of the Week: System Administrator at DE Shaw Research

DE Shaw Research in New York is seeking a System Administrator in our Job of the Week. Ideal candidates should have strong fundamental knowledge of Linux concepts such as file systems, networking, and processes in addition to practical experience administering Linux systems.

Job of the Week: HPC System Administrators at D.E. Shaw Research in New York

D.E. Shaw Research in New York is seeking HPC System Administrators in our Job of the Week. “Our research effort is aimed at achieving major scientific advances in the field of biochemistry and fundamentally transforming the process of drug discovery. Exceptional sysadmins sought to manage systems, storage, and network infrastructure for a New York–based interdisciplinary research group. Positions are available at our New York City offices, and at our data centers in Durham, NC and Endicott, NY.”

Slidecast: How Optalysys Accelerates FFTs with Optical Processing

In this RichReport slidecast, Dr. Nick New from Optalysys describes how the company’s optical processing technology delivers accelerated performance for FFTs and Bioinformatics. “Our prototype is on track to achieve game-changing improvements to process times over current methods whilst providing high levels of accuracy that are associated with the best software processes.”

Video: The State of Bioinformatics in HPC

“In the last few years DNA sequencing technologies have become extremely cheap enabling us to quickly generate terabytes of data for a few thousand dollars. Analysis of this data has become the new bottleneck. Novel compute-intensive streaming approaches that leverage this data without the time-costly step of genome assembly and how UWA’s Edwards group leveraged these approaches to find new breeding targets in crop species are presented.”

HudsonAlpha to expand Encyclopedia of DNA Elements Project

Today the HudsonAlpha Institute for Biotechnology, a nonprofit genomics and genetics research institute, has been awarded a four-year, $6.7 million grant from the National Institutes of Health (NIH) for the next phase of the Encyclopedia of DNA Elements (ENCODE) Project, a fundamental genomics resource used by many scientists to study human health and disease. Funded […]

Building the CLIMB Project – World’s Largest Single System for Microbial Bioinformatics

A new private Cloud HPC system will soon benefit bioinformatics researchers in their work on bacterial pathogens. The Cloud Infrastructure for Microbial Bioinformatics (CLIMB) project, a collaboration between the University of Birmingham, the University of Warwick, Cardiff University, and Swansea University, will create a free-to-use, world leading cyber infrastructure specifically designed for microbial bioinformatics research.

Tuning Bioinformatics Codes with Allinea Performance Reports

In this video from ISC 2015, Mark O’Connor from Allinea demonstrates how the company’s Performance Reports tool enables coders to speed up the Discovar bioinformatics code. “Allinea Performance Reports are the most effective way to characterize and understand the performance of HPC application runs. One single-page HTML report elegantly answers a range of vital questions for any HPC installation.”

Video: HPC Trends in the Trenches from Bio-IT World

In this video, Chris Dagdigian from Bioteam delivers his annual assessment of the best, the worthwhile, and the most overhyped information technologies for life sciences at the 2015 Bio-IT World Conference & Expo in Boston.