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High Throughput Data Acquisition at the CMS experiment at CERN

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“The CMS detector at the Large Hadron Collider at CERN underwent a replacement of its data acquisition network to be able to process the increased data rate expected in the coming years. We will present the architecture of the system and discuss the design of its layers which are based on Infiniband as well as 10 and 40 GBit/s Ethernet.”

HPC Market Update from Intersect360 Research

addison2

“The drive toward exascale computing, a renewed emphasis on data-centric processing, energy efficiency concerns, and the limitations of memory and I/O performance are all working to reshape High Performance Computing platforms. Many-core accelerators, flash storage, 3D memory, integrated networking, and optical interconnects are just some of the technologies propelling these future architectures. In concert with those developments, the HPC vendor landscape has been churning in response to broader market forces, and these events are going to drive some interesting changes in the coming year.”

Video: Increasing Cluster Throughput while Reducing Energy Consumption for GPU Workloads

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“The use of GPUs to accelerate applications is mainstream nowadays, but their adoption in cur- rent clusters presents several drawbacks. In this talk we present the last developments of the rCUDA remote GPU virtualization framework, which is the only one supporting the most recent CUDA version, in addition to leverage the InfiniBand fabric for the sake of performance.”

Going from the Lab to the Data Center

Genomic Sequencing

In the late 1980s, genomic sequencing began to shift from wet lab work to a computationally intensive science; by end of the 1990s this trend was in full swing. The application of computer science and high performance computing (HPC) to these biological problems became the normal mode of operation for many molecular biologists.

Video: Slim Fly – A Cost Effective Low-Diameter Network Topology

torsten

“We introduce a high-performance cost-effective network topology called Slim Fly that approaches the theoretically optimal network diameter. Slim Fly is based on graphs that approximate the solution to the degree-diameter problem. We analyze Slim Fly and compare it to both traditional and state-of-the-art networks. Our analysis shows that Slim Fly has significant advantages over other topologies in latency, bandwidth, resiliency, cost, and power consumption.”

How Supercomputers Give Universities a Competitive Edge

As one of the fastest supercomputers in Academia, Clemson's Palmetto2 cluster is an HP system with 12,080 compute cores and a peak performance of 739 Teraflops.

In an NSF-funded study, a Clemson University team found that universities with locally available supercomputers were more efficient in producing research in critical fields than universities that lacked supercomputers.

Video: High-Performance and Scalable Designs of Programming Models for Exascale Systems

DK Panda

“This talk will focus on programming models and their designs for upcoming exascale systems with millions of processors and accelerators. Current status and future trends of MPI and PGAS (UPC and OpenSHMEM) programming models will be presented. We will discuss challenges in designing runtime environments for these programming models by taking into account support for multi-core, high-performance networks, GPGPUs, Intel MIC, scalable collectives (multi-core-aware, topology-aware, and power-aware), non-blocking collectives using Offload framework, one-sided RMA operations, schemes and architectures for fault-tolerance/fault-resilience.”

Video: Dimensioning Data Centre Resiliency at CSCS

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“The Swiss National Supercomputing Centre (CSCS) offers a range of computing and storage services to Swiss and international research communities. These services are provisioned by an array of solutions including leading edge Cray XC40 and hybrid XC30 systems, commodity clusters, files systems such as Lustre and site-wide GPFS storage as well as centre-wide Ethernet and InfiniBand networks.”

Podcast: Fighting Alzheimer’s with HPC

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In this podcast, Dr. Rudy Tanzi from Harvard Medical School describes his pioneering research in Alzheimer’s disease and how HPC is critical to the path forward. “Dr. Tanzi currently spearheads the Alzheimer’s Genome Project, which recently identified four new AD gene candidates. This achievement was named one of the “Top Ten Medical Breakthroughs of 2008” by Time Magazine.”

Podcast: Supercomputing BioFuels at TACC

Prof. Dr. Klaus Schulten

In this TACC podcast, Klaus Schulten of the University of Illinois at Urbana-Champaign describes the analysis and modeling of the cellulosome bond. The research could boost efforts to develop catalysts for biofuel production from non-food waste plants.